Hb_000395_140

Information

Type -
Description -
Location Contig395: 148972-154492
Sequence    

Annotation

kegg
ID rcu:RCOM_1312960
description Oligopeptide transporter, putative
nr
ID XP_002518892.1
description Oligopeptide transporter, putative [Ricinus communis]
swissprot
ID O82485
description Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1
trembl
ID B9RYS3
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1312960 PE=4 SV=1
Gene Ontology
ID GO:0015198
description oligopeptide transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39514: 149754-150461 , PASA_asmbl_39515: 150476-153359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_140 0.0 - - Oligopeptide transporter, putative [Ricinus communis]
2 Hb_001357_190 0.1030400586 - - ribonuclease III, putative [Ricinus communis]
3 Hb_006029_010 0.112039447 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
4 Hb_002675_190 0.1200555341 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000771_160 0.1214901328 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
6 Hb_000208_290 0.1233588827 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
7 Hb_000161_030 0.1236607333 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
8 Hb_002377_050 0.1265068816 - - Agmatine deiminase, putative [Ricinus communis]
9 Hb_000491_080 0.1273349735 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
10 Hb_007441_070 0.1309136919 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
11 Hb_001341_040 0.1317747576 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
12 Hb_000684_180 0.1329704751 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
13 Hb_007111_040 0.1332651662 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
14 Hb_004156_060 0.133704611 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
15 Hb_004931_040 0.1350227828 - - splicing factor-related family protein [Populus trichocarpa]
16 Hb_005228_120 0.1360802518 - - phospholipase d beta, putative [Ricinus communis]
17 Hb_000940_040 0.1366400405 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
18 Hb_117950_020 0.1370122675 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
19 Hb_098315_110 0.1373072417 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000413_130 0.1388172516 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_140 Hb_000395_140 Hb_001357_190 Hb_001357_190 Hb_000395_140--Hb_001357_190 Hb_006029_010 Hb_006029_010 Hb_000395_140--Hb_006029_010 Hb_002675_190 Hb_002675_190 Hb_000395_140--Hb_002675_190 Hb_000771_160 Hb_000771_160 Hb_000395_140--Hb_000771_160 Hb_000208_290 Hb_000208_290 Hb_000395_140--Hb_000208_290 Hb_000161_030 Hb_000161_030 Hb_000395_140--Hb_000161_030 Hb_007441_070 Hb_007441_070 Hb_001357_190--Hb_007441_070 Hb_002405_020 Hb_002405_020 Hb_001357_190--Hb_002405_020 Hb_001357_190--Hb_002675_190 Hb_002149_040 Hb_002149_040 Hb_001357_190--Hb_002149_040 Hb_153547_010 Hb_153547_010 Hb_001357_190--Hb_153547_010 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_000331_480 Hb_000331_480 Hb_002675_190--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_001439_180 Hb_001439_180 Hb_002675_190--Hb_001439_180 Hb_001034_020 Hb_001034_020 Hb_002675_190--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_000771_160--Hb_002405_020 Hb_113216_010 Hb_113216_010 Hb_000771_160--Hb_113216_010 Hb_004669_040 Hb_004669_040 Hb_000771_160--Hb_004669_040 Hb_000185_090 Hb_000185_090 Hb_000771_160--Hb_000185_090 Hb_001582_030 Hb_001582_030 Hb_000771_160--Hb_001582_030 Hb_009615_110 Hb_009615_110 Hb_000771_160--Hb_009615_110 Hb_000208_290--Hb_004156_060 Hb_000208_290--Hb_000161_030 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6775 3.8431 1.80815 2.04088 40.499 25.6677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8791 5.35883 12.3443 9.70666 1.19695

CAGE analysis