Hb_002759_280

Information

Type -
Description -
Location Contig2759: 250472-255136
Sequence    

Annotation

kegg
ID rcu:RCOM_0699780
description hypothetical protein
nr
ID XP_012092017.1
description PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067JBX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21753 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28880: 250272-255441 , PASA_asmbl_28881: 251009-255416 , PASA_asmbl_28882: 253272-253581 , PASA_asmbl_28883: 250347-251652
cDNA
(Sanger)
(ID:Location)		 033_I07.ab1: 250272-251885 , 045_D11.ab1: 250389-251958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_280 0.0 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
2 Hb_002027_120 0.079234539 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
3 Hb_009838_100 0.0899864081 - - hypothetical protein RCOM_1217340 [Ricinus communis]
4 Hb_001252_080 0.0909224085 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
5 Hb_034299_040 0.0981710667 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_002196_020 0.0999540731 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001001_060 0.104033003 - - -
8 Hb_002039_010 0.1065111155 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_004204_020 0.1077255958 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
10 Hb_082609_020 0.1081928245 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000321_070 0.1090100079 - - protein with unknown function [Ricinus communis]
12 Hb_001790_020 0.1106947012 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
13 Hb_000057_040 0.1110767673 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000062_240 0.1119960054 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
15 Hb_012634_010 0.1125484847 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
16 Hb_000160_040 0.1126751914 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
17 Hb_005730_030 0.1134402003 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
18 Hb_007101_170 0.1137746253 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
19 Hb_001484_120 0.1149622789 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
20 Hb_004440_100 0.115109567 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_280 Hb_002759_280 Hb_002027_120 Hb_002027_120 Hb_002759_280--Hb_002027_120 Hb_009838_100 Hb_009838_100 Hb_002759_280--Hb_009838_100 Hb_001252_080 Hb_001252_080 Hb_002759_280--Hb_001252_080 Hb_034299_040 Hb_034299_040 Hb_002759_280--Hb_034299_040 Hb_002196_020 Hb_002196_020 Hb_002759_280--Hb_002196_020 Hb_001001_060 Hb_001001_060 Hb_002759_280--Hb_001001_060 Hb_015306_020 Hb_015306_020 Hb_002027_120--Hb_015306_020 Hb_002027_120--Hb_001001_060 Hb_011918_080 Hb_011918_080 Hb_002027_120--Hb_011918_080 Hb_007943_080 Hb_007943_080 Hb_002027_120--Hb_007943_080 Hb_002027_120--Hb_009838_100 Hb_000331_210 Hb_000331_210 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_000062_240 Hb_000062_240 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100 Hb_000358_150 Hb_000358_150 Hb_001252_080--Hb_000358_150 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_000676_110 Hb_000676_110 Hb_001252_080--Hb_000676_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001369_420 Hb_001369_420 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_051407_010 Hb_051407_010 Hb_034299_040--Hb_051407_010 Hb_000398_190 Hb_000398_190 Hb_034299_040--Hb_000398_190 Hb_034299_040--Hb_001252_080 Hb_109168_010 Hb_109168_010 Hb_034299_040--Hb_109168_010 Hb_000318_510 Hb_000318_510 Hb_002196_020--Hb_000318_510 Hb_000321_070 Hb_000321_070 Hb_002196_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_002196_020--Hb_000160_040 Hb_067345_010 Hb_067345_010 Hb_002196_020--Hb_067345_010 Hb_006332_010 Hb_006332_010 Hb_002196_020--Hb_006332_010 Hb_000915_050 Hb_000915_050 Hb_002196_020--Hb_000915_050 Hb_001001_060--Hb_000009_170 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_000120_800 Hb_000120_800 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3099 12.557 8.5234 14.8266 42.0887 41.3494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6889 24.3477 39.1944 36.272 7.12134

CAGE analysis