Hb_002027_120

Information

Type -
Description -
Location Contig2027: 55471-58262
Sequence    

Annotation

kegg
ID rcu:RCOM_0647510
description nutrient reservoir, putative
nr
ID XP_012092315.1
description PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
swissprot
ID Q0WPJ7
description Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1
trembl
ID A0A067JCF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21992 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rf298

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_120 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
2 Hb_002759_280 0.079234539 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
3 Hb_015306_020 0.0827140957 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
4 Hb_001001_060 0.0857330347 - - -
5 Hb_011918_080 0.092560684 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
6 Hb_007943_080 0.0949482749 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
7 Hb_009838_100 0.0953241661 - - hypothetical protein RCOM_1217340 [Ricinus communis]
8 Hb_001789_090 0.0955352815 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
9 Hb_000062_240 0.0957962014 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
10 Hb_002039_010 0.0965981798 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000152_820 0.0966937324 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
12 Hb_000291_110 0.0982933511 - - eukaryotic translation initiation factor [Hevea brasiliensis]
13 Hb_000190_140 0.1004411119 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_002307_100 0.1008976218 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
15 Hb_001252_080 0.1012068733 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
16 Hb_004225_020 0.101396003 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001454_210 0.1014038584 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
18 Hb_002026_100 0.1024420322 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
19 Hb_000317_020 0.1025257207 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
20 Hb_082609_020 0.1032481109 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002027_120 Hb_002027_120 Hb_002759_280 Hb_002759_280 Hb_002027_120--Hb_002759_280 Hb_015306_020 Hb_015306_020 Hb_002027_120--Hb_015306_020 Hb_001001_060 Hb_001001_060 Hb_002027_120--Hb_001001_060 Hb_011918_080 Hb_011918_080 Hb_002027_120--Hb_011918_080 Hb_007943_080 Hb_007943_080 Hb_002027_120--Hb_007943_080 Hb_009838_100 Hb_009838_100 Hb_002027_120--Hb_009838_100 Hb_002759_280--Hb_009838_100 Hb_001252_080 Hb_001252_080 Hb_002759_280--Hb_001252_080 Hb_034299_040 Hb_034299_040 Hb_002759_280--Hb_034299_040 Hb_002196_020 Hb_002196_020 Hb_002759_280--Hb_002196_020 Hb_002759_280--Hb_001001_060 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_009111_050 Hb_009111_050 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010 Hb_000009_170 Hb_000009_170 Hb_001001_060--Hb_000009_170 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_000120_800 Hb_000120_800 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_007558_140 Hb_007558_140 Hb_011918_080--Hb_007558_140 Hb_002477_160 Hb_002477_160 Hb_011918_080--Hb_002477_160 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_011918_080--Hb_004046_010 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300 Hb_000358_080 Hb_000358_080 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007943_080--Hb_007558_140 Hb_003861_080 Hb_003861_080 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_000331_210 Hb_000331_210 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_009838_100--Hb_000009_170 Hb_000062_240 Hb_000062_240 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.763625 0.255414 0.0851455 0.237019 0.661138 0.621644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.485567 0.427925 0.843319 0.528351 0.162093

CAGE analysis