Hb_028872_060

Information

Type -
Description -
Location Contig28872: 38026-42351
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06740g
description POPTRDRAFT_768979; hypothetical protein
nr
ID XP_012085643.1
description PREDICTED: ankyrin-3-like [Jatropha curcas]
swissprot
ID G5E8K5
description Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1
trembl
ID B9HTA2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06740g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30104: 40961-41236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_060 0.0 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
2 Hb_001150_040 0.1487442368 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
3 Hb_004242_190 0.1514676063 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_004230_040 0.1569310386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000640_300 0.1636448142 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
6 Hb_000009_620 0.1826624693 - - zinc finger protein, putative [Ricinus communis]
7 Hb_155123_010 0.187689764 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_000390_150 0.1889078554 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
9 Hb_000203_180 0.1929342129 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
10 Hb_005052_020 0.1957770026 - - -
11 Hb_003160_020 0.1960177291 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
12 Hb_004738_020 0.1961715555 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001472_120 0.1965765127 - - -
14 Hb_002028_220 0.1969563101 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
15 Hb_000116_480 0.1995625953 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
16 Hb_000116_230 0.2010489881 - - -
17 Hb_000703_250 0.202806016 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
18 Hb_002400_400 0.2029825572 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
19 Hb_011472_040 0.2082004559 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
20 Hb_001279_140 0.2083201286 - - PREDICTED: cystinosin homolog [Jatropha curcas]

Gene co-expression network

sample Hb_028872_060 Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004242_190 Hb_004242_190 Hb_028872_060--Hb_004242_190 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_004738_020 Hb_004738_020 Hb_001150_040--Hb_004738_020 Hb_000203_180 Hb_000203_180 Hb_001150_040--Hb_000203_180 Hb_004225_180 Hb_004225_180 Hb_001150_040--Hb_004225_180 Hb_001150_040--Hb_000640_300 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060 Hb_001258_060 Hb_001258_060 Hb_004242_190--Hb_001258_060 Hb_000805_320 Hb_000805_320 Hb_004242_190--Hb_000805_320 Hb_006816_200 Hb_006816_200 Hb_004242_190--Hb_006816_200 Hb_002407_080 Hb_002407_080 Hb_004242_190--Hb_002407_080 Hb_003120_030 Hb_003120_030 Hb_004242_190--Hb_003120_030 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_000640_300--Hb_004230_040 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_008376_010 Hb_008376_010 Hb_155123_010--Hb_008376_010 Hb_018133_120 Hb_018133_120 Hb_155123_010--Hb_018133_120 Hb_155123_010--Hb_004738_020 Hb_155123_010--Hb_001856_010 Hb_004116_200 Hb_004116_200 Hb_155123_010--Hb_004116_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76058 2.3893 0.0966171 0.265849 2.86151 3.19157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08157 2.5074 2.14779 5.95233 0

CAGE analysis