Hb_002028_220

Information

Type -
Description -
Location Contig2028: 224733-239180
Sequence    

Annotation

kegg
ID rcu:RCOM_0708300
description aminoadipic semialdehyde synthase, putative (EC:1.5.1.8 1.5.1.10)
nr
ID XP_002516185.1
description aminoadipic semialdehyde synthase, putative [Ricinus communis]
swissprot
ID Q9SMZ4
description Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH PE=1 SV=1
trembl
ID B9RR16
description Aminoadipic semialdehyde synthase, putative OS=Ricinus communis GN=RCOM_0708300 PE=4 SV=1
Gene Ontology
ID GO:0005829
description alpha-aminoadipic semialdehyde synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20776: 224432-267830 , PASA_asmbl_20777: 224432-239119 , PASA_asmbl_20779: 227850-228080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_220 0.0 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
2 Hb_004230_040 0.1207607208 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003044_030 0.1264479588 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
4 Hb_001472_120 0.141265795 - - -
5 Hb_000252_170 0.1436569901 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
6 Hb_002391_270 0.151308702 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
7 Hb_006816_200 0.1517744738 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000062_070 0.153358066 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_001021_080 0.1534297166 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
10 Hb_000116_410 0.1552899406 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
11 Hb_000140_480 0.1560692695 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
12 Hb_000296_070 0.1581240626 - - hypothetical protein B456_003G048700 [Gossypium raimondii]
13 Hb_008147_070 0.1584306378 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
14 Hb_077562_030 0.1590542494 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
15 Hb_002400_400 0.1593196911 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
16 Hb_000347_440 0.1601753613 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
17 Hb_002972_020 0.1613214143 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_000152_660 0.1632226949 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
19 Hb_033501_010 0.1649437878 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
20 Hb_000676_190 0.1677954109 - - hypothetical protein JCGZ_08279 [Jatropha curcas]

Gene co-expression network

sample Hb_002028_220 Hb_002028_220 Hb_004230_040 Hb_004230_040 Hb_002028_220--Hb_004230_040 Hb_003044_030 Hb_003044_030 Hb_002028_220--Hb_003044_030 Hb_001472_120 Hb_001472_120 Hb_002028_220--Hb_001472_120 Hb_000252_170 Hb_000252_170 Hb_002028_220--Hb_000252_170 Hb_002391_270 Hb_002391_270 Hb_002028_220--Hb_002391_270 Hb_006816_200 Hb_006816_200 Hb_002028_220--Hb_006816_200 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_001021_080 Hb_001021_080 Hb_003044_030--Hb_001021_080 Hb_000071_070 Hb_000071_070 Hb_003044_030--Hb_000071_070 Hb_000152_660 Hb_000152_660 Hb_003044_030--Hb_000152_660 Hb_004064_010 Hb_004064_010 Hb_003044_030--Hb_004064_010 Hb_000402_190 Hb_000402_190 Hb_003044_030--Hb_000402_190 Hb_001279_140 Hb_001279_140 Hb_001472_120--Hb_001279_140 Hb_000483_360 Hb_000483_360 Hb_001472_120--Hb_000483_360 Hb_005539_030 Hb_005539_030 Hb_001472_120--Hb_005539_030 Hb_000003_480 Hb_000003_480 Hb_001472_120--Hb_000003_480 Hb_001936_020 Hb_001936_020 Hb_001472_120--Hb_001936_020 Hb_004577_020 Hb_004577_020 Hb_001472_120--Hb_004577_020 Hb_000296_070 Hb_000296_070 Hb_000252_170--Hb_000296_070 Hb_000123_210 Hb_000123_210 Hb_000252_170--Hb_000123_210 Hb_031340_050 Hb_031340_050 Hb_000252_170--Hb_031340_050 Hb_000907_110 Hb_000907_110 Hb_000252_170--Hb_000907_110 Hb_001357_250 Hb_001357_250 Hb_000252_170--Hb_001357_250 Hb_000556_160 Hb_000556_160 Hb_000252_170--Hb_000556_160 Hb_000009_240 Hb_000009_240 Hb_002391_270--Hb_000009_240 Hb_000116_410 Hb_000116_410 Hb_002391_270--Hb_000116_410 Hb_000645_090 Hb_000645_090 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_000023_280 Hb_000023_280 Hb_002391_270--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_002391_270--Hb_010142_030 Hb_002027_140 Hb_002027_140 Hb_006816_200--Hb_002027_140 Hb_004800_070 Hb_004800_070 Hb_006816_200--Hb_004800_070 Hb_006114_010 Hb_006114_010 Hb_006816_200--Hb_006114_010 Hb_006816_200--Hb_000252_170 Hb_009687_010 Hb_009687_010 Hb_006816_200--Hb_009687_010 Hb_002471_150 Hb_002471_150 Hb_006816_200--Hb_002471_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11117 7.90892 2.52896 4.66822 7.12914 6.8784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24116 7.29727 5.40934 14.716 0.55052

CAGE analysis