Hb_000270_220

Information

Type -
Description -
Location Contig270: 202267-203080
Sequence    

Annotation

kegg
ID eus:EUTSA_v100213350m
description hypothetical protein
nr
ID XP_006407583.1
description hypothetical protein EUTSA_v100213350mg, partial [Eutrema salsugineum]
swissprot
ID P58110
description Transcription initiation factor IIB 2 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbB PE=3 SV=1
trembl
ID V4NR01
description Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v100213350mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor iib-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28178: 188217-202778 , PASA_asmbl_28179: 203389-208011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_220 0.0 - - hypothetical protein EUTSA_v100213350mg, partial [Eutrema salsugineum]
2 Hb_148079_010 0.14246784 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
3 Hb_019053_020 0.1638739783 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
4 Hb_005147_060 0.1645155011 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
5 Hb_058643_010 0.1660900663 - - hydrolase, putative [Ricinus communis]
6 Hb_000021_030 0.1684111656 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
7 Hb_004732_020 0.1714600746 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
8 Hb_001102_150 0.1716921732 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_025814_010 0.1784892809 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
10 Hb_123954_010 0.1820068944 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
11 Hb_001840_070 0.1850880869 - - DNA binding protein, putative [Ricinus communis]
12 Hb_002805_070 0.1856609554 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
13 Hb_000109_170 0.1868608971 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
14 Hb_005211_100 0.1869232208 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
15 Hb_001675_070 0.1875426339 - - eukaryotic translation elongation factor, putative [Ricinus communis]
16 Hb_003683_180 0.1889602463 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000271_090 0.1896554746 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_051407_010 0.1905809438 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
19 Hb_002600_140 0.1928335284 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
20 Hb_001143_110 0.1936182162 - - hypothetical protein JCGZ_12107 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_220 Hb_000270_220 Hb_148079_010 Hb_148079_010 Hb_000270_220--Hb_148079_010 Hb_019053_020 Hb_019053_020 Hb_000270_220--Hb_019053_020 Hb_005147_060 Hb_005147_060 Hb_000270_220--Hb_005147_060 Hb_058643_010 Hb_058643_010 Hb_000270_220--Hb_058643_010 Hb_000021_030 Hb_000021_030 Hb_000270_220--Hb_000021_030 Hb_004732_020 Hb_004732_020 Hb_000270_220--Hb_004732_020 Hb_148079_010--Hb_019053_020 Hb_103760_010 Hb_103760_010 Hb_148079_010--Hb_103760_010 Hb_148079_010--Hb_005147_060 Hb_007026_040 Hb_007026_040 Hb_148079_010--Hb_007026_040 Hb_126295_010 Hb_126295_010 Hb_148079_010--Hb_126295_010 Hb_148079_010--Hb_004732_020 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_019053_020--Hb_103760_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_005147_060--Hb_004732_020 Hb_008103_040 Hb_008103_040 Hb_005147_060--Hb_008103_040 Hb_005211_100 Hb_005211_100 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_005147_060--Hb_058643_010 Hb_001691_120 Hb_001691_120 Hb_005147_060--Hb_001691_120 Hb_058643_010--Hb_005211_100 Hb_003988_010 Hb_003988_010 Hb_058643_010--Hb_003988_010 Hb_001675_070 Hb_001675_070 Hb_058643_010--Hb_001675_070 Hb_011310_160 Hb_011310_160 Hb_058643_010--Hb_011310_160 Hb_001357_270 Hb_001357_270 Hb_058643_010--Hb_001357_270 Hb_011716_020 Hb_011716_020 Hb_000021_030--Hb_011716_020 Hb_000470_080 Hb_000470_080 Hb_000021_030--Hb_000470_080 Hb_000021_030--Hb_011310_160 Hb_000613_080 Hb_000613_080 Hb_000021_030--Hb_000613_080 Hb_002028_170 Hb_002028_170 Hb_000021_030--Hb_002028_170 Hb_000021_030--Hb_001675_070 Hb_004732_020--Hb_005211_100 Hb_003777_310 Hb_003777_310 Hb_004732_020--Hb_003777_310 Hb_023001_060 Hb_023001_060 Hb_004732_020--Hb_023001_060 Hb_004732_020--Hb_001691_120 Hb_007192_080 Hb_007192_080 Hb_004732_020--Hb_007192_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447973 0.312518 0.562298 1.1476 2.16143 2.98174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.690151 0.722932 0.847004 2.36145 0.309385

CAGE analysis