Hb_001675_070

Information

Type -
Description -
Location Contig1675: 51658-55698
Sequence    

Annotation

kegg
ID rcu:RCOM_1068970
description eukaryotic translation elongation factor, putative
nr
ID XP_002523907.1
description eukaryotic translation elongation factor, putative [Ricinus communis]
swissprot
ID O23755
description Elongation factor 2 OS=Beta vulgaris PE=2 SV=1
trembl
ID B9SD38
description Eukaryotic translation elongation factor, putative OS=Ricinus communis GN=RCOM_1068970 PE=4 SV=1
Gene Ontology
ID GO:0005840
description elongation factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15509: 50430-51361 , PASA_asmbl_15510: 51741-55702 , PASA_asmbl_15511: 51899-55641
cDNA
(Sanger)
(ID:Location)		 009_K12.ab1: 50430-51344 , 011_I17.ab1: 51899-53555 , 012_P08.ab1: 50434-51343 , 018_A04.ab1: 50430-51361 , 020_B14.ab1: 50434-51343 , 025_B16.ab1: 51899-53592 , 033_N11.ab1: 51899-53477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_070 0.0 - - eukaryotic translation elongation factor, putative [Ricinus communis]
2 Hb_000209_070 0.0696141382 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
3 Hb_001541_080 0.0827298656 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001143_110 0.0829913668 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
5 Hb_003464_020 0.0844286899 - - srpk, putative [Ricinus communis]
6 Hb_011716_020 0.0847668502 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
7 Hb_000347_130 0.0893332547 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
8 Hb_000023_190 0.0906018001 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
9 Hb_001488_410 0.0930261544 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
10 Hb_022250_110 0.0931724525 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
11 Hb_174821_010 0.0941076935 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
12 Hb_006478_060 0.0943472993 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
13 Hb_000600_070 0.0959037138 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
14 Hb_000613_080 0.0960965879 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
15 Hb_001221_150 0.0964399603 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
16 Hb_001621_130 0.0981256913 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
17 Hb_003090_080 0.0996794745 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
18 Hb_000059_150 0.1020727022 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
19 Hb_004974_010 0.1020939965 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
20 Hb_005494_020 0.1023188328 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_070 Hb_001675_070 Hb_000209_070 Hb_000209_070 Hb_001675_070--Hb_000209_070 Hb_001541_080 Hb_001541_080 Hb_001675_070--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_001675_070--Hb_001143_110 Hb_003464_020 Hb_003464_020 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_000209_070--Hb_003464_020 Hb_001541_080--Hb_001143_110 Hb_000300_440 Hb_000300_440 Hb_001541_080--Hb_000300_440 Hb_001541_080--Hb_003464_020 Hb_000317_250 Hb_000317_250 Hb_001541_080--Hb_000317_250 Hb_001221_040 Hb_001221_040 Hb_001541_080--Hb_001221_040 Hb_001143_110--Hb_003464_020 Hb_001143_110--Hb_000317_250 Hb_000023_190 Hb_000023_190 Hb_001143_110--Hb_000023_190 Hb_033834_060 Hb_033834_060 Hb_001143_110--Hb_033834_060 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_002600_140 Hb_002600_140 Hb_011716_020--Hb_002600_140 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5525 23.2508 14.5211 30.8098 63.4504 64.3319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8101 14.7635 19.7094 45.2487 19.5676

CAGE analysis