Hb_000317_250

Information

Type -
Description -
Location Contig317: 190322-196225
Sequence    

Annotation

kegg
ID sot:102601318
description calcium-dependent protein kinase SK5-like
nr
ID XP_012088375.1
description PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
swissprot
ID Q39016
description Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2
trembl
ID A0A067JXH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25866 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase sk5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33385: 190125-190264 , PASA_asmbl_33386: 190365-196364
cDNA
(Sanger)
(ID:Location)		 006_K14.ab1: 190365-192415 , 021_F22.ab1: 190365-192439 , 035_C08.ab1: 190365-192587

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_250 0.0 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
2 Hb_001541_080 0.0781094035 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001143_110 0.0840165176 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
4 Hb_033834_060 0.0852017472 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
5 Hb_000333_060 0.087684934 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_004689_050 0.0897799223 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003464_020 0.0913011875 - - srpk, putative [Ricinus communis]
8 Hb_000300_440 0.0914669757 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
9 Hb_001235_140 0.0942643448 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
10 Hb_007632_240 0.0970035824 - - transporter, putative [Ricinus communis]
11 Hb_004429_100 0.0972959788 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
12 Hb_002309_010 0.0981543095 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
13 Hb_002631_170 0.098502038 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
14 Hb_001946_010 0.0985254296 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_001172_010 0.099373769 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
16 Hb_002078_100 0.0998669635 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
17 Hb_000260_170 0.1001428163 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
18 Hb_000270_630 0.1005163641 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
19 Hb_000920_210 0.1020363802 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
20 Hb_000023_190 0.1021872108 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000317_250 Hb_000317_250 Hb_001541_080 Hb_001541_080 Hb_000317_250--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_000317_250--Hb_001143_110 Hb_033834_060 Hb_033834_060 Hb_000317_250--Hb_033834_060 Hb_000333_060 Hb_000333_060 Hb_000317_250--Hb_000333_060 Hb_004689_050 Hb_004689_050 Hb_000317_250--Hb_004689_050 Hb_003464_020 Hb_003464_020 Hb_000317_250--Hb_003464_020 Hb_001541_080--Hb_001143_110 Hb_000300_440 Hb_000300_440 Hb_001541_080--Hb_000300_440 Hb_001541_080--Hb_003464_020 Hb_001221_040 Hb_001221_040 Hb_001541_080--Hb_001221_040 Hb_001675_070 Hb_001675_070 Hb_001541_080--Hb_001675_070 Hb_001143_110--Hb_003464_020 Hb_001143_110--Hb_001675_070 Hb_000023_190 Hb_000023_190 Hb_001143_110--Hb_000023_190 Hb_001143_110--Hb_033834_060 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_001935_110 Hb_001935_110 Hb_000333_060--Hb_001935_110 Hb_028308_010 Hb_028308_010 Hb_000333_060--Hb_028308_010 Hb_000109_210 Hb_000109_210 Hb_000333_060--Hb_000109_210 Hb_002684_040 Hb_002684_040 Hb_000333_060--Hb_002684_040 Hb_002078_100 Hb_002078_100 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_004689_050--Hb_004429_100 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7363 8.12614 8.87698 10.633 18.5973 20.4744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8673 7.28875 5.28808 20.5372 8.25043

CAGE analysis