Hb_165071_030

Information

Type -
Description -
Location Contig165071: 9807-20689
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007050046.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P27502
description Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165071_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_010513_010 0.1876570422 - - -
3 Hb_012979_020 0.2014990053 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
4 Hb_000252_130 0.224668267 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
5 Hb_000116_420 0.2265163225 - - PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
6 Hb_011484_010 0.2371505433 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_002820_010 0.2451718438 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
8 Hb_020334_010 0.2454797026 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_082182_010 0.2460003826 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_101808_010 0.2559684238 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
11 Hb_001114_050 0.2582204804 - - hypothetical protein RCOM_0744580 [Ricinus communis]
12 Hb_003906_090 0.2586385061 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
13 Hb_007645_080 0.2611887742 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
14 Hb_000399_010 0.2620343139 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_001357_010 0.2625213578 - - -
16 Hb_029510_040 0.2704529747 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
17 Hb_005224_030 0.2716676771 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
18 Hb_003226_160 0.2738814227 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
19 Hb_000116_430 0.2745408188 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
20 Hb_005505_020 0.2763346656 - - Potassium channel AKT1, putative [Ricinus communis]

Gene co-expression network

sample Hb_165071_030 Hb_165071_030 Hb_010513_010 Hb_010513_010 Hb_165071_030--Hb_010513_010 Hb_012979_020 Hb_012979_020 Hb_165071_030--Hb_012979_020 Hb_000252_130 Hb_000252_130 Hb_165071_030--Hb_000252_130 Hb_000116_420 Hb_000116_420 Hb_165071_030--Hb_000116_420 Hb_011484_010 Hb_011484_010 Hb_165071_030--Hb_011484_010 Hb_002820_010 Hb_002820_010 Hb_165071_030--Hb_002820_010 Hb_010513_010--Hb_000252_130 Hb_010513_010--Hb_000116_420 Hb_082182_010 Hb_082182_010 Hb_010513_010--Hb_082182_010 Hb_002286_010 Hb_002286_010 Hb_010513_010--Hb_002286_010 Hb_003095_040 Hb_003095_040 Hb_010513_010--Hb_003095_040 Hb_003861_020 Hb_003861_020 Hb_012979_020--Hb_003861_020 Hb_001014_120 Hb_001014_120 Hb_012979_020--Hb_001014_120 Hb_002289_090 Hb_002289_090 Hb_012979_020--Hb_002289_090 Hb_101808_010 Hb_101808_010 Hb_012979_020--Hb_101808_010 Hb_005725_090 Hb_005725_090 Hb_012979_020--Hb_005725_090 Hb_000252_130--Hb_002820_010 Hb_000723_190 Hb_000723_190 Hb_000252_130--Hb_000723_190 Hb_003642_050 Hb_003642_050 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000252_130--Hb_000116_420 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_000454_070 Hb_000454_070 Hb_000116_420--Hb_000454_070 Hb_029888_010 Hb_029888_010 Hb_000116_420--Hb_029888_010 Hb_003750_030 Hb_003750_030 Hb_000116_420--Hb_003750_030 Hb_000116_430 Hb_000116_430 Hb_000116_420--Hb_000116_430 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_002820_010--Hb_003642_050 Hb_008931_010 Hb_008931_010 Hb_002820_010--Hb_008931_010 Hb_002820_010--Hb_000723_190 Hb_001846_070 Hb_001846_070 Hb_002820_010--Hb_001846_070 Hb_002374_120 Hb_002374_120 Hb_002820_010--Hb_002374_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189233 0.00896303 0 0 0 0.0100056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.012349 0.0485902 0.0372671 0.026959 0.0207877

CAGE analysis