Hb_002374_120

Information

Type -
Description -
Location Contig2374: 101808-103044
Sequence    

Annotation

kegg
ID rcu:RCOM_0562960
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078277.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
swissprot
ID Q1PFC5
description Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
trembl
ID A0A067KCU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
2 Hb_002820_010 0.2012610397 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
3 Hb_003642_050 0.2674730308 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
4 Hb_000029_310 0.2679997006 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
5 Hb_006787_050 0.2741045435 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
6 Hb_000252_130 0.2745335807 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
7 Hb_030370_030 0.2815416037 - - putative wall-associated kinase family protein [Populus trichocarpa]
8 Hb_178968_160 0.282429103 - - -
9 Hb_000116_420 0.2829658177 - - PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
10 Hb_000935_030 0.2838992041 - - Squalene monooxygenase, putative [Ricinus communis]
11 Hb_008931_010 0.2854516522 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
12 Hb_001828_080 0.2889149533 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
13 Hb_015057_060 0.290058025 - - -
14 Hb_010142_070 0.2941556373 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
15 Hb_000735_130 0.294714816 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001846_070 0.2953198429 - - PREDICTED: fructokinase-1 [Jatropha curcas]
17 Hb_000208_120 0.2954919186 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
18 Hb_000062_340 0.2962253352 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
19 Hb_001322_050 0.2965629562 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
20 Hb_001439_190 0.2968775913 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_002374_120 Hb_002374_120 Hb_002820_010 Hb_002820_010 Hb_002374_120--Hb_002820_010 Hb_003642_050 Hb_003642_050 Hb_002374_120--Hb_003642_050 Hb_000029_310 Hb_000029_310 Hb_002374_120--Hb_000029_310 Hb_006787_050 Hb_006787_050 Hb_002374_120--Hb_006787_050 Hb_000252_130 Hb_000252_130 Hb_002374_120--Hb_000252_130 Hb_030370_030 Hb_030370_030 Hb_002374_120--Hb_030370_030 Hb_002820_010--Hb_000252_130 Hb_002820_010--Hb_003642_050 Hb_008931_010 Hb_008931_010 Hb_002820_010--Hb_008931_010 Hb_000723_190 Hb_000723_190 Hb_002820_010--Hb_000723_190 Hb_001846_070 Hb_001846_070 Hb_002820_010--Hb_001846_070 Hb_000125_030 Hb_000125_030 Hb_003642_050--Hb_000125_030 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003504_020 Hb_003504_020 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_012799_100 Hb_012799_100 Hb_003642_050--Hb_012799_100 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_008173_020 Hb_008173_020 Hb_000029_310--Hb_008173_020 Hb_002685_040 Hb_002685_040 Hb_000029_310--Hb_002685_040 Hb_004032_020 Hb_004032_020 Hb_000029_310--Hb_004032_020 Hb_112798_030 Hb_112798_030 Hb_000029_310--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_000029_310--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_000029_310--Hb_003607_150 Hb_000684_240 Hb_000684_240 Hb_006787_050--Hb_000684_240 Hb_000208_120 Hb_000208_120 Hb_006787_050--Hb_000208_120 Hb_000421_180 Hb_000421_180 Hb_006787_050--Hb_000421_180 Hb_000926_020 Hb_000926_020 Hb_006787_050--Hb_000926_020 Hb_000708_040 Hb_000708_040 Hb_006787_050--Hb_000708_040 Hb_001322_050 Hb_001322_050 Hb_006787_050--Hb_001322_050 Hb_000252_130--Hb_000723_190 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000116_420 Hb_000116_420 Hb_000252_130--Hb_000116_420 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_010589_110 Hb_010589_110 Hb_030370_030--Hb_010589_110 Hb_160837_010 Hb_160837_010 Hb_030370_030--Hb_160837_010 Hb_000544_110 Hb_000544_110 Hb_030370_030--Hb_000544_110 Hb_000803_050 Hb_000803_050 Hb_030370_030--Hb_000803_050 Hb_001102_250 Hb_001102_250 Hb_030370_030--Hb_001102_250 Hb_005908_040 Hb_005908_040 Hb_030370_030--Hb_005908_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329943 0 0.11958 0 0 0.0542035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141055 0.33272 0.399989 0.0674154 0.110939

CAGE analysis