Hb_000708_040

Information

Type -
Description -
Location Contig708: 43743-47101
Sequence    

Annotation

kegg
ID rcu:RCOM_0810690
description hypothetical protein
nr
ID XP_002518649.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RY65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0810690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000708_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000032_440 0.1344628669 - - protein with unknown function [Ricinus communis]
3 Hb_002284_310 0.1585759381 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
4 Hb_000317_490 0.1695810422 - - Gibberellin receptor GID1, putative [Ricinus communis]
5 Hb_003688_050 0.1701103513 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
6 Hb_002234_060 0.1771221191 - - F-box protein, atfbl3, putative [Ricinus communis]
7 Hb_000331_460 0.1815683694 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
8 Hb_004225_080 0.1824744269 - - -
9 Hb_003992_170 0.1831399879 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
10 Hb_001004_150 0.1895577369 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
11 Hb_001544_030 0.1904241238 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
12 Hb_000326_040 0.1915803688 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
13 Hb_000258_330 0.1916774665 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_001662_060 0.1918894754 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
15 Hb_000540_050 0.1947591051 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
16 Hb_000723_200 0.1959172364 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
17 Hb_171376_010 0.1966521148 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
18 Hb_004097_130 0.196962774 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
19 Hb_006711_060 0.2002789576 - - Tubulin beta-1 chain [Morus notabilis]
20 Hb_154471_020 0.2018879001 - - squalene synthetase [Euphorbia tirucalli]

Gene co-expression network

sample Hb_000708_040 Hb_000708_040 Hb_000032_440 Hb_000032_440 Hb_000708_040--Hb_000032_440 Hb_002284_310 Hb_002284_310 Hb_000708_040--Hb_002284_310 Hb_000317_490 Hb_000317_490 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460 Hb_000032_440--Hb_000317_490 Hb_000032_440--Hb_002284_310 Hb_000243_080 Hb_000243_080 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_004225_080 Hb_004225_080 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_000317_490--Hb_002183_070 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030 Hb_154471_020 Hb_154471_020 Hb_003688_050--Hb_154471_020 Hb_002304_150 Hb_002304_150 Hb_003688_050--Hb_002304_150 Hb_001205_310 Hb_001205_310 Hb_003688_050--Hb_001205_310 Hb_001799_030 Hb_001799_030 Hb_003688_050--Hb_001799_030 Hb_171376_010 Hb_171376_010 Hb_003688_050--Hb_171376_010 Hb_004097_130 Hb_004097_130 Hb_003688_050--Hb_004097_130 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_002234_060--Hb_000317_490 Hb_002234_060--Hb_002016_170 Hb_000836_450 Hb_000836_450 Hb_002234_060--Hb_000836_450 Hb_000025_210 Hb_000025_210 Hb_002234_060--Hb_000025_210 Hb_004225_030 Hb_004225_030 Hb_002234_060--Hb_004225_030 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000331_460--Hb_000603_230 Hb_000331_460--Hb_004225_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.86035 1.63611 6.26515 6.15212 0.646387 3.30445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.22827 2.5961 12.2193 1.58885 3.94858

CAGE analysis