Hb_000331_460

Information

Type -
Description -
Location Contig331: 387426-389662
Sequence    

Annotation

kegg
ID rcu:RCOM_1507360
description sentrin/sumo-specific protease, putative
nr
ID XP_012079903.1
description PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
swissprot
ID Q0WKV8
description Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2
trembl
ID A0A067K4B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11348 PE=4 SV=1
Gene Ontology
ID GO:0008234
description probable ubiquitin-like-specific protease 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34804: 387487-388823 , PASA_asmbl_34805: 387442-388808 , PASA_asmbl_34806: 388837-389804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_460 0.0 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
2 Hb_002284_310 0.1126821909 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
3 Hb_001004_150 0.1542149078 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
4 Hb_000032_440 0.1573239476 - - protein with unknown function [Ricinus communis]
5 Hb_001545_100 0.1587359599 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
6 Hb_000603_230 0.1616125665 - - copper-transporting atpase paa1, putative [Ricinus communis]
7 Hb_004225_080 0.1640964095 - - -
8 Hb_001059_160 0.1654566747 - - hexose transporter 1 [Hevea brasiliensis]
9 Hb_004346_030 0.1659873248 - - sucrose phosphate phosphatase, putative [Ricinus communis]
10 Hb_175557_010 0.1662710539 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
11 Hb_000174_030 0.1680327245 - - hypothetical protein RCOM_1077370 [Ricinus communis]
12 Hb_001059_150 0.1702410827 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
13 Hb_019516_080 0.1747597546 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003992_170 0.1752282211 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
15 Hb_003849_150 0.1801480997 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
16 Hb_007831_020 0.1809313681 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000708_040 0.1815683694 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002234_060 0.1835488588 - - F-box protein, atfbl3, putative [Ricinus communis]
19 Hb_000853_190 0.183651689 - - mitochondrial carrier protein, putative [Ricinus communis]
20 Hb_000208_120 0.1838509261 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000331_460 Hb_000331_460 Hb_002284_310 Hb_002284_310 Hb_000331_460--Hb_002284_310 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000032_440 Hb_000032_440 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000603_230 Hb_000603_230 Hb_000331_460--Hb_000603_230 Hb_004225_080 Hb_004225_080 Hb_000331_460--Hb_004225_080 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_001153_120 Hb_001153_120 Hb_001004_150--Hb_001153_120 Hb_000310_100 Hb_000310_100 Hb_001004_150--Hb_000310_100 Hb_001454_100 Hb_001454_100 Hb_001004_150--Hb_001454_100 Hb_012244_010 Hb_012244_010 Hb_001004_150--Hb_012244_010 Hb_000377_150 Hb_000377_150 Hb_001004_150--Hb_000377_150 Hb_000317_490 Hb_000317_490 Hb_000032_440--Hb_000317_490 Hb_000708_040 Hb_000708_040 Hb_000032_440--Hb_000708_040 Hb_000032_440--Hb_002284_310 Hb_000243_080 Hb_000243_080 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_003540_030 Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_175557_010 Hb_175557_010 Hb_000603_230--Hb_175557_010 Hb_075751_010 Hb_075751_010 Hb_000603_230--Hb_075751_010 Hb_002600_090 Hb_002600_090 Hb_000603_230--Hb_002600_090 Hb_000603_230--Hb_002871_190 Hb_003082_030 Hb_003082_030 Hb_000603_230--Hb_003082_030 Hb_010931_130 Hb_010931_130 Hb_000603_230--Hb_010931_130 Hb_004225_080--Hb_000140_050 Hb_000258_330 Hb_000258_330 Hb_004225_080--Hb_000258_330 Hb_004225_080--Hb_003540_030 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22307 0.230567 3.91438 3.49723 1.09104 0.772271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66443 3.33108 6.42205 0.865769 4.29865

CAGE analysis