Hb_000377_150

Information

Type -
Description -
Location Contig377: 235641-241118
Sequence    

Annotation

kegg
ID rcu:RCOM_0861290
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002522881.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9SCY5
description SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
trembl
ID B9SA62
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0861290 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit beta-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_150 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_000457_290 0.1058007925 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
3 Hb_002503_020 0.1154790961 - - Phosphatase 2C family protein, putative [Theobroma cacao]
4 Hb_000428_060 0.1157006308 - - malate dehydrogenase, putative [Ricinus communis]
5 Hb_000615_050 0.1165302785 - - Potassium transporter 11 family protein [Populus trichocarpa]
6 Hb_001153_120 0.1169884762 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
7 Hb_161175_010 0.1183497773 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
8 Hb_000649_140 0.1194600455 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
9 Hb_000175_030 0.1205285758 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
10 Hb_000673_020 0.1270612771 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
11 Hb_003291_020 0.1281554711 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
12 Hb_000403_070 0.1289881365 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_019113_020 0.1293648326 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
14 Hb_000934_190 0.130746059 - - SER/ARG-rich protein 34A [Theobroma cacao]
15 Hb_008566_030 0.131408628 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
16 Hb_001059_150 0.1316766248 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
17 Hb_012244_010 0.1320219163 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
18 Hb_000125_210 0.1327697308 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
19 Hb_003360_040 0.1329627258 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
20 Hb_006573_290 0.1334037574 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]

Gene co-expression network

sample Hb_000377_150 Hb_000377_150 Hb_000457_290 Hb_000457_290 Hb_000377_150--Hb_000457_290 Hb_002503_020 Hb_002503_020 Hb_000377_150--Hb_002503_020 Hb_000428_060 Hb_000428_060 Hb_000377_150--Hb_000428_060 Hb_000615_050 Hb_000615_050 Hb_000377_150--Hb_000615_050 Hb_001153_120 Hb_001153_120 Hb_000377_150--Hb_001153_120 Hb_161175_010 Hb_161175_010 Hb_000377_150--Hb_161175_010 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000457_290--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_000457_290--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_019113_020 Hb_019113_020 Hb_002503_020--Hb_019113_020 Hb_000125_210 Hb_000125_210 Hb_002503_020--Hb_000125_210 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190 Hb_000617_200 Hb_000617_200 Hb_002503_020--Hb_000617_200 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_001662_130 Hb_001662_130 Hb_000615_050--Hb_001662_130 Hb_001766_050 Hb_001766_050 Hb_000615_050--Hb_001766_050 Hb_000649_140 Hb_000649_140 Hb_000615_050--Hb_000649_140 Hb_158530_020 Hb_158530_020 Hb_000615_050--Hb_158530_020 Hb_004951_060 Hb_004951_060 Hb_000615_050--Hb_004951_060 Hb_001541_120 Hb_001541_120 Hb_000615_050--Hb_001541_120 Hb_012244_010 Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_001153_120--Hb_002045_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33448 1.28131 2.28241 3.81566 0.263316 0.953612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42617 5.31628 5.5495 2.59294 5.06115

CAGE analysis