Hb_000258_330

Information

Type -
Description -
Location Contig258: 315553-327819
Sequence    

Annotation

kegg
ID rcu:RCOM_0835650
description Ran GTPase binding protein, putative
nr
ID XP_002522401.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q15751
description Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2
trembl
ID B9S8T2
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0835650 PE=4 SV=1
Gene Ontology
ID GO:0005938
description regulator of chromosome condensation family with fyve zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26839: 315644-315866 , PASA_asmbl_26840: 321523-322305 , PASA_asmbl_26842: 323709-324509 , PASA_asmbl_26843: 325360-327666 , PASA_asmbl_26844: 325362-325609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_330 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_004225_080 0.1075275822 - - -
3 Hb_000046_100 0.1219005607 - - NADH dehydrogenase, putative [Ricinus communis]
4 Hb_003582_040 0.1251786878 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
5 Hb_001080_280 0.1355724146 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
6 Hb_009510_020 0.139872118 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
7 Hb_001279_340 0.1427733578 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
8 Hb_000108_070 0.1445814945 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_002183_070 0.1457521549 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
10 Hb_001096_110 0.1463468172 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_001357_120 0.1492499986 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
12 Hb_000175_030 0.1520472662 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
13 Hb_000592_020 0.1521926098 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_003849_150 0.1527158195 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
15 Hb_000836_450 0.1529956682 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
16 Hb_000362_190 0.1545218497 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
17 Hb_000069_600 0.1549873055 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
18 Hb_005569_020 0.1554638693 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015778_010 0.1556757213 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
20 Hb_008948_100 0.1563308651 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000258_330 Hb_000258_330 Hb_004225_080 Hb_004225_080 Hb_000258_330--Hb_004225_080 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_003582_040 Hb_003582_040 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_009510_020 Hb_009510_020 Hb_000258_330--Hb_009510_020 Hb_001279_340 Hb_001279_340 Hb_000258_330--Hb_001279_340 Hb_001545_100 Hb_001545_100 Hb_004225_080--Hb_001545_100 Hb_000140_050 Hb_000140_050 Hb_004225_080--Hb_000140_050 Hb_003540_030 Hb_003540_030 Hb_004225_080--Hb_003540_030 Hb_002871_190 Hb_002871_190 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_010407_180 Hb_010407_180 Hb_003582_040--Hb_010407_180 Hb_000592_020 Hb_000592_020 Hb_003582_040--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_003582_040--Hb_000141_020 Hb_000147_040 Hb_000147_040 Hb_003582_040--Hb_000147_040 Hb_005569_020 Hb_005569_020 Hb_003582_040--Hb_005569_020 Hb_004705_120 Hb_004705_120 Hb_001080_280--Hb_004705_120 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_001153_150 Hb_001153_150 Hb_009510_020--Hb_001153_150 Hb_009510_020--Hb_003582_040 Hb_014497_120 Hb_014497_120 Hb_009510_020--Hb_014497_120 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_000120_960 Hb_000120_960 Hb_001279_340--Hb_000120_960 Hb_002284_200 Hb_002284_200 Hb_001279_340--Hb_002284_200 Hb_001279_340--Hb_010407_180 Hb_001279_340--Hb_001545_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42876 1.1823 2.59583 3.11474 0.450223 1.26032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93918 3.44055 6.81961 2.1729 2.1016

CAGE analysis