Hb_014497_120

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A reductase
Location Contig14497: 97755-101170
Sequence    

Annotation

kegg
ID rcu:RCOM_1602200
description hmg-CoA reductase, putative (EC:1.1.1.34)
nr
ID P29057.1
description RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
swissprot
ID P29057
description 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1
trembl
ID Q547W6
description 3-hydroxy-3-methylglutaryl coenzyme A reductase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005789
description 3-hydroxy-3-methylglutaryl-coenzyme a reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11706: 97741-101048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_120 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
2 Hb_009510_020 0.1481480377 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
3 Hb_001153_150 0.1687436936 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
4 Hb_000914_170 0.1750740963 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
5 Hb_000032_440 0.1754884159 - - protein with unknown function [Ricinus communis]
6 Hb_002732_030 0.177539876 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
7 Hb_000258_330 0.1847817026 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000317_490 0.1906308788 - - Gibberellin receptor GID1, putative [Ricinus communis]
9 Hb_000080_220 0.1931317765 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000243_080 0.1934691703 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
11 Hb_006570_070 0.1982142511 - - cyclophilin [Hevea brasiliensis]
12 Hb_003589_080 0.2084418857 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
13 Hb_002183_070 0.2114661259 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
14 Hb_003582_040 0.212641241 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
15 Hb_000138_170 0.216457943 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
16 Hb_004225_030 0.2216905383 - - hypothetical protein F383_15788 [Gossypium arboreum]
17 Hb_000331_460 0.2218493654 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_005433_040 0.2232620772 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
19 Hb_000046_100 0.2245688408 - - NADH dehydrogenase, putative [Ricinus communis]
20 Hb_002471_100 0.2275248798 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_014497_120 Hb_014497_120 Hb_009510_020 Hb_009510_020 Hb_014497_120--Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_002732_030 Hb_002732_030 Hb_014497_120--Hb_002732_030 Hb_000258_330 Hb_000258_330 Hb_014497_120--Hb_000258_330 Hb_009510_020--Hb_001153_150 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_001153_150--Hb_002732_030 Hb_001153_150--Hb_004883_030 Hb_000362_190 Hb_000362_190 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_000307_140 Hb_000307_140 Hb_001153_150--Hb_000307_140 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_002260_030 Hb_002260_030 Hb_000914_170--Hb_002260_030 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_000317_490 Hb_000317_490 Hb_000032_440--Hb_000317_490 Hb_000708_040 Hb_000708_040 Hb_000032_440--Hb_000708_040 Hb_002284_310 Hb_002284_310 Hb_000032_440--Hb_002284_310 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_012940_030 Hb_012940_030 Hb_002732_030--Hb_012940_030 Hb_002732_030--Hb_009510_020 Hb_002732_030--Hb_000362_190 Hb_000362_180 Hb_000362_180 Hb_002732_030--Hb_000362_180 Hb_004225_080 Hb_004225_080 Hb_000258_330--Hb_004225_080 Hb_000258_330--Hb_000046_100 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_001279_340 Hb_001279_340 Hb_000258_330--Hb_001279_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5686 3.40654 9.33364 19.9147 3.18295 1.66313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3945 8.51676 20.9854 2.80773 6.15211

CAGE analysis