Hb_002732_030

Information

Type transcription factor
Description TF Family: AP2
Location Contig2732: 42336-46166
Sequence    

Annotation

kegg
ID rcu:RCOM_0328910
description Protein AINTEGUMENTA, putative (EC:1.3.1.74)
nr
ID XP_012064916.1
description PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SK03
description Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
trembl
ID A0A067L6P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05603 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor rap2-7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28522: 41911-45835 , PASA_asmbl_28523: 43805-45869 , PASA_asmbl_28524: 43805-45869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002732_030 0.0 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
2 Hb_001153_150 0.1169188135 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
3 Hb_012940_030 0.1581934033 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
4 Hb_009510_020 0.1609945345 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
5 Hb_000362_190 0.1754982896 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
6 Hb_014497_120 0.177539876 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
7 Hb_000362_180 0.1850220986 - - Pdap1 [Gossypium arboreum]
8 Hb_004052_040 0.187631585 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_000152_370 0.1884734588 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
10 Hb_033594_030 0.1897145662 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
11 Hb_000317_490 0.1946544001 - - Gibberellin receptor GID1, putative [Ricinus communis]
12 Hb_000202_040 0.1947780616 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
13 Hb_001269_610 0.2015729409 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
14 Hb_000417_100 0.2020610421 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
15 Hb_001314_030 0.2033564558 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
16 Hb_059480_010 0.2033923833 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
17 Hb_000826_090 0.2035906516 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
18 Hb_001416_010 0.2038390617 - - Thioredoxin H-type, putative [Ricinus communis]
19 Hb_010128_100 0.2045966862 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
20 Hb_000080_220 0.2046931578 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002732_030 Hb_002732_030 Hb_001153_150 Hb_001153_150 Hb_002732_030--Hb_001153_150 Hb_012940_030 Hb_012940_030 Hb_002732_030--Hb_012940_030 Hb_009510_020 Hb_009510_020 Hb_002732_030--Hb_009510_020 Hb_000362_190 Hb_000362_190 Hb_002732_030--Hb_000362_190 Hb_014497_120 Hb_014497_120 Hb_002732_030--Hb_014497_120 Hb_000362_180 Hb_000362_180 Hb_002732_030--Hb_000362_180 Hb_001153_150--Hb_009510_020 Hb_004883_030 Hb_004883_030 Hb_001153_150--Hb_004883_030 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_000307_140 Hb_000307_140 Hb_001153_150--Hb_000307_140 Hb_000115_080 Hb_000115_080 Hb_012940_030--Hb_000115_080 Hb_000152_370 Hb_000152_370 Hb_012940_030--Hb_000152_370 Hb_005276_060 Hb_005276_060 Hb_012940_030--Hb_005276_060 Hb_059480_010 Hb_059480_010 Hb_012940_030--Hb_059480_010 Hb_001087_030 Hb_001087_030 Hb_012940_030--Hb_001087_030 Hb_000258_330 Hb_000258_330 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_009510_020--Hb_014497_120 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_089995_010 Hb_089995_010 Hb_000362_190--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_000362_190--Hb_005391_040 Hb_076233_040 Hb_076233_040 Hb_000362_190--Hb_076233_040 Hb_003502_060 Hb_003502_060 Hb_000362_190--Hb_003502_060 Hb_001545_160 Hb_001545_160 Hb_000362_190--Hb_001545_160 Hb_006420_080 Hb_006420_080 Hb_000362_190--Hb_006420_080 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_014497_120--Hb_000258_330 Hb_004176_070 Hb_004176_070 Hb_000362_180--Hb_004176_070 Hb_000362_180--Hb_059480_010 Hb_000362_180--Hb_000115_080 Hb_000510_300 Hb_000510_300 Hb_000362_180--Hb_000510_300 Hb_004032_030 Hb_004032_030 Hb_000362_180--Hb_004032_030 Hb_124373_010 Hb_124373_010 Hb_000362_180--Hb_124373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4333 3.46326 4.09612 12.9132 1.66887 2.61823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.229 5.11887 4.4071 3.17087 5.34316

CAGE analysis