Hb_001153_150

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A reductase
Location Contig1153: 89220-94483
Sequence    

Annotation

kegg
ID rcu:RCOM_1683050
description hydroxymethylglutaryl-CoA synthase, putative (EC:2.3.3.10)
nr
ID AAS46245.1
description HMG-CoA synthase 2 [Hevea brasiliensis]
swissprot
ID P54873
description Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2
trembl
ID Q6QLW8
description HMG-CoA synthase 2 OS=Hevea brasiliensis GN=HMGS2 PE=2 SV=1
Gene Ontology
ID GO:0004421
description hydroxymethylglutaryl- synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04612: 89226-94515
cDNA
(Sanger)
(ID:Location)		 022_A12.ab1: 92400-94388 , 026_O08.ab1: 92398-94389 , 033_J23.ab1: 92442-94515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_150 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
2 Hb_009510_020 0.1143763479 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
3 Hb_002732_030 0.1169188135 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
4 Hb_004883_030 0.1307420253 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2-like [Jatropha curcas]
5 Hb_000362_190 0.1470346471 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
6 Hb_033594_030 0.1535236273 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
7 Hb_000307_140 0.1555302534 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
8 Hb_000000_460 0.156092743 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
9 Hb_000976_160 0.1565706931 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
10 Hb_000390_200 0.1598052919 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
11 Hb_004204_140 0.1603978793 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
12 Hb_001416_010 0.1615037209 - - Thioredoxin H-type, putative [Ricinus communis]
13 Hb_006570_070 0.1615576634 - - cyclophilin [Hevea brasiliensis]
14 Hb_001247_100 0.1633174059 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
15 Hb_005433_040 0.1653395699 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
16 Hb_014497_120 0.1687436936 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
17 Hb_004052_040 0.1689355569 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_000417_100 0.1690788698 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
19 Hb_000317_490 0.1714977767 - - Gibberellin receptor GID1, putative [Ricinus communis]
20 Hb_000987_070 0.1721541445 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001153_150 Hb_001153_150 Hb_009510_020 Hb_009510_020 Hb_001153_150--Hb_009510_020 Hb_002732_030 Hb_002732_030 Hb_001153_150--Hb_002732_030 Hb_004883_030 Hb_004883_030 Hb_001153_150--Hb_004883_030 Hb_000362_190 Hb_000362_190 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_000307_140 Hb_000307_140 Hb_001153_150--Hb_000307_140 Hb_000258_330 Hb_000258_330 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_014497_120 Hb_014497_120 Hb_009510_020--Hb_014497_120 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_012940_030 Hb_012940_030 Hb_002732_030--Hb_012940_030 Hb_002732_030--Hb_009510_020 Hb_002732_030--Hb_000362_190 Hb_002732_030--Hb_014497_120 Hb_000362_180 Hb_000362_180 Hb_002732_030--Hb_000362_180 Hb_000230_270 Hb_000230_270 Hb_004883_030--Hb_000230_270 Hb_000347_030 Hb_000347_030 Hb_004883_030--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_004883_030--Hb_000125_190 Hb_004883_030--Hb_001247_100 Hb_000000_460 Hb_000000_460 Hb_004883_030--Hb_000000_460 Hb_089995_010 Hb_089995_010 Hb_000362_190--Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_000362_190--Hb_005391_040 Hb_076233_040 Hb_076233_040 Hb_000362_190--Hb_076233_040 Hb_003502_060 Hb_003502_060 Hb_000362_190--Hb_003502_060 Hb_001545_160 Hb_001545_160 Hb_000362_190--Hb_001545_160 Hb_006420_080 Hb_006420_080 Hb_000362_190--Hb_006420_080 Hb_000270_490 Hb_000270_490 Hb_033594_030--Hb_000270_490 Hb_000207_120 Hb_000207_120 Hb_033594_030--Hb_000207_120 Hb_003994_290 Hb_003994_290 Hb_033594_030--Hb_003994_290 Hb_003050_270 Hb_003050_270 Hb_033594_030--Hb_003050_270 Hb_003571_030 Hb_003571_030 Hb_033594_030--Hb_003571_030 Hb_073973_100 Hb_073973_100 Hb_033594_030--Hb_073973_100 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_005725_080 Hb_005725_080 Hb_000307_140--Hb_005725_080 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000442_150 Hb_000442_150 Hb_000307_140--Hb_000442_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.367 22.0652 23.8851 87.9286 23.2297 30.1495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.896 37.0328 50.4854 23.8071 21.9685

CAGE analysis