Hb_012940_030

Information

Type -
Description -
Location Contig12940: 24891-26093
Sequence    

Annotation

kegg
ID rcu:RCOM_1408320
description hypothetical protein
nr
ID XP_012079231.1
description PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12395 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08839: 25126-26217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012940_030 0.0 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
2 Hb_000115_080 0.1366971035 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
3 Hb_000152_370 0.1498490651 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
4 Hb_002732_030 0.1581934033 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
5 Hb_005276_060 0.1619400094 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
6 Hb_059480_010 0.1647428459 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
7 Hb_001087_030 0.1674070806 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
8 Hb_000071_120 0.168983223 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
9 Hb_024879_010 0.1694937683 - - unknown [Glycine max]
10 Hb_001016_050 0.171419692 - - drought-inducible protein [Manihot esculenta]
11 Hb_003929_170 0.1719695297 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
12 Hb_008406_180 0.1747276234 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
13 Hb_010485_020 0.1761723591 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
14 Hb_012651_010 0.1768507351 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
15 Hb_000362_180 0.1772493438 - - Pdap1 [Gossypium arboreum]
16 Hb_007793_050 0.1779510254 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002311_380 0.17916575 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
18 Hb_001136_070 0.1797960098 - - Transmembrane protein TPARL, putative [Ricinus communis]
19 Hb_003893_030 0.1803192233 - - Protein yrdA, putative [Ricinus communis]
20 Hb_084247_010 0.1804526901 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012940_030 Hb_012940_030 Hb_000115_080 Hb_000115_080 Hb_012940_030--Hb_000115_080 Hb_000152_370 Hb_000152_370 Hb_012940_030--Hb_000152_370 Hb_002732_030 Hb_002732_030 Hb_012940_030--Hb_002732_030 Hb_005276_060 Hb_005276_060 Hb_012940_030--Hb_005276_060 Hb_059480_010 Hb_059480_010 Hb_012940_030--Hb_059480_010 Hb_001087_030 Hb_001087_030 Hb_012940_030--Hb_001087_030 Hb_002311_380 Hb_002311_380 Hb_000115_080--Hb_002311_380 Hb_006570_150 Hb_006570_150 Hb_000115_080--Hb_006570_150 Hb_003929_170 Hb_003929_170 Hb_000115_080--Hb_003929_170 Hb_000115_080--Hb_001087_030 Hb_000115_080--Hb_059480_010 Hb_001723_150 Hb_001723_150 Hb_000115_080--Hb_001723_150 Hb_028207_060 Hb_028207_060 Hb_000152_370--Hb_028207_060 Hb_007445_010 Hb_007445_010 Hb_000152_370--Hb_007445_010 Hb_000429_050 Hb_000429_050 Hb_000152_370--Hb_000429_050 Hb_001511_240 Hb_001511_240 Hb_000152_370--Hb_001511_240 Hb_008749_040 Hb_008749_040 Hb_000152_370--Hb_008749_040 Hb_001153_150 Hb_001153_150 Hb_002732_030--Hb_001153_150 Hb_009510_020 Hb_009510_020 Hb_002732_030--Hb_009510_020 Hb_000362_190 Hb_000362_190 Hb_002732_030--Hb_000362_190 Hb_014497_120 Hb_014497_120 Hb_002732_030--Hb_014497_120 Hb_000362_180 Hb_000362_180 Hb_002732_030--Hb_000362_180 Hb_012395_170 Hb_012395_170 Hb_005276_060--Hb_012395_170 Hb_084247_010 Hb_084247_010 Hb_005276_060--Hb_084247_010 Hb_000009_400 Hb_000009_400 Hb_005276_060--Hb_000009_400 Hb_001016_050 Hb_001016_050 Hb_005276_060--Hb_001016_050 Hb_003617_020 Hb_003617_020 Hb_005276_060--Hb_003617_020 Hb_005276_060--Hb_003929_170 Hb_059480_010--Hb_084247_010 Hb_000522_150 Hb_000522_150 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_059480_010--Hb_003929_170 Hb_000107_230 Hb_000107_230 Hb_059480_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_059480_010--Hb_004052_040 Hb_001087_030--Hb_003929_170 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3345 6.63679 6.83122 16.9592 4.58645 3.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.99101 3.81819 4.02547 2.99518 6.19072

CAGE analysis