Hb_028207_060

Information

Type -
Description -
Location Contig28207: 35216-37239
Sequence    

Annotation

kegg
ID rcu:RCOM_1408060
description hypothetical protein
nr
ID XP_012078604.1
description PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K866
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29560: 35293-37218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028207_060 0.0 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
2 Hb_000152_370 0.131586206 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
3 Hb_003998_010 0.1439273769 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
4 Hb_007445_010 0.147370105 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_001662_050 0.1503160335 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
6 Hb_001488_220 0.1543260697 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_000413_070 0.1545758128 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002213_040 0.1569674998 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
9 Hb_002192_030 0.1572244859 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002662_050 0.1598564872 - - cysteine protease CP1 [Manihot esculenta]
11 Hb_000656_150 0.1708099734 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
12 Hb_004355_040 0.1733455982 - - epoxide hydrolase, putative [Ricinus communis]
13 Hb_000099_030 0.1733967701 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
14 Hb_002367_110 0.1734887434 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
15 Hb_000230_130 0.1737450757 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
16 Hb_000193_300 0.1747940514 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_001842_010 0.1772692213 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_001946_180 0.1778883136 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003673_050 0.1780376952 - - hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
20 Hb_001205_110 0.1814304096 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_028207_060 Hb_028207_060 Hb_000152_370 Hb_000152_370 Hb_028207_060--Hb_000152_370 Hb_003998_010 Hb_003998_010 Hb_028207_060--Hb_003998_010 Hb_007445_010 Hb_007445_010 Hb_028207_060--Hb_007445_010 Hb_001662_050 Hb_001662_050 Hb_028207_060--Hb_001662_050 Hb_001488_220 Hb_001488_220 Hb_028207_060--Hb_001488_220 Hb_000413_070 Hb_000413_070 Hb_028207_060--Hb_000413_070 Hb_000152_370--Hb_007445_010 Hb_000429_050 Hb_000429_050 Hb_000152_370--Hb_000429_050 Hb_001511_240 Hb_001511_240 Hb_000152_370--Hb_001511_240 Hb_012940_030 Hb_012940_030 Hb_000152_370--Hb_012940_030 Hb_008749_040 Hb_008749_040 Hb_000152_370--Hb_008749_040 Hb_000588_080 Hb_000588_080 Hb_003998_010--Hb_000588_080 Hb_002995_040 Hb_002995_040 Hb_003998_010--Hb_002995_040 Hb_000318_040 Hb_000318_040 Hb_003998_010--Hb_000318_040 Hb_002874_090 Hb_002874_090 Hb_003998_010--Hb_002874_090 Hb_003998_010--Hb_000413_070 Hb_001059_130 Hb_001059_130 Hb_003998_010--Hb_001059_130 Hb_007445_010--Hb_001511_240 Hb_007445_010--Hb_001488_220 Hb_102698_010 Hb_102698_010 Hb_007445_010--Hb_102698_010 Hb_001442_060 Hb_001442_060 Hb_007445_010--Hb_001442_060 Hb_000099_030 Hb_000099_030 Hb_007445_010--Hb_000099_030 Hb_000238_030 Hb_000238_030 Hb_007445_010--Hb_000238_030 Hb_000330_060 Hb_000330_060 Hb_001662_050--Hb_000330_060 Hb_001307_240 Hb_001307_240 Hb_001662_050--Hb_001307_240 Hb_001141_310 Hb_001141_310 Hb_001662_050--Hb_001141_310 Hb_000455_130 Hb_000455_130 Hb_001662_050--Hb_000455_130 Hb_001160_070 Hb_001160_070 Hb_001662_050--Hb_001160_070 Hb_005215_020 Hb_005215_020 Hb_001662_050--Hb_005215_020 Hb_001552_030 Hb_001552_030 Hb_001488_220--Hb_001552_030 Hb_008511_020 Hb_008511_020 Hb_001488_220--Hb_008511_020 Hb_002784_030 Hb_002784_030 Hb_001488_220--Hb_002784_030 Hb_001488_220--Hb_000238_030 Hb_001789_030 Hb_001789_030 Hb_001488_220--Hb_001789_030 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000413_070--Hb_000588_080 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.216 20.1538 8.49211 48.6914 9.58137 13.1074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8643 3.43697 7.92446 23.4491 24.2049

CAGE analysis