Hb_001511_240

Information

Type -
Description -
Location Contig1511: 276004-286476
Sequence    

Annotation

kegg
ID rcu:RCOM_0838170
description nucleotide binding protein, putative
nr
ID XP_011035924.1
description PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
swissprot
ID Q9Y2K9
description Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=1 SV=2
trembl
ID B9SQN1
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0838170 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12786: 276550-279290 , PASA_asmbl_12787: 279910-280764 , PASA_asmbl_12788: 280931-286481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_240 0.0 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
2 Hb_007445_010 0.0738798869 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_006373_010 0.0813294773 - - Potassium transporter 11 [Gossypium arboreum]
4 Hb_009193_120 0.0852940281 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
5 Hb_007083_030 0.0856950201 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_007336_010 0.0879506665 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
7 Hb_004452_110 0.0933015492 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
8 Hb_001442_060 0.0934743713 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
9 Hb_006658_020 0.0950021569 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
10 Hb_000981_030 0.0965985821 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
11 Hb_000590_050 0.0994736728 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_102698_010 0.0996168801 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_011609_140 0.0997301243 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
14 Hb_006520_040 0.1001133319 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
15 Hb_000890_060 0.1006302457 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
16 Hb_003517_040 0.1008083696 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
17 Hb_001571_050 0.1022155692 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
18 Hb_011344_160 0.1023541464 - - PREDICTED: primary amine oxidase [Jatropha curcas]
19 Hb_002414_050 0.1027916832 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
20 Hb_000679_270 0.1036685097 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_240 Hb_001511_240 Hb_007445_010 Hb_007445_010 Hb_001511_240--Hb_007445_010 Hb_006373_010 Hb_006373_010 Hb_001511_240--Hb_006373_010 Hb_009193_120 Hb_009193_120 Hb_001511_240--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_001511_240--Hb_007083_030 Hb_007336_010 Hb_007336_010 Hb_001511_240--Hb_007336_010 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110 Hb_001488_220 Hb_001488_220 Hb_007445_010--Hb_001488_220 Hb_102698_010 Hb_102698_010 Hb_007445_010--Hb_102698_010 Hb_001442_060 Hb_001442_060 Hb_007445_010--Hb_001442_060 Hb_000099_030 Hb_000099_030 Hb_007445_010--Hb_000099_030 Hb_000238_030 Hb_000238_030 Hb_007445_010--Hb_000238_030 Hb_011609_140 Hb_011609_140 Hb_006373_010--Hb_011609_140 Hb_006373_010--Hb_009193_120 Hb_006373_010--Hb_007083_030 Hb_000044_040 Hb_000044_040 Hb_006373_010--Hb_000044_040 Hb_021443_040 Hb_021443_040 Hb_006373_010--Hb_021443_040 Hb_001343_040 Hb_001343_040 Hb_009193_120--Hb_001343_040 Hb_001449_040 Hb_001449_040 Hb_009193_120--Hb_001449_040 Hb_009193_120--Hb_001442_060 Hb_009193_120--Hb_007083_030 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_002815_030 Hb_002815_030 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340 Hb_001492_020 Hb_001492_020 Hb_007336_010--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_007336_010--Hb_002235_170 Hb_001205_240 Hb_001205_240 Hb_007336_010--Hb_001205_240 Hb_000363_240 Hb_000363_240 Hb_007336_010--Hb_000363_240 Hb_000327_270 Hb_000327_270 Hb_007336_010--Hb_000327_270 Hb_000345_160 Hb_000345_160 Hb_004452_110--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_000300_270 Hb_000300_270 Hb_004452_110--Hb_000300_270 Hb_002046_160 Hb_002046_160 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8386 8.34846 4.62128 10.6428 5.56487 8.70532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.53897 5.03409 4.84895 9.7182 10.2318

CAGE analysis