Hb_009193_120

Information

Type desease resistance
Description Gene Name: AAA_22
Location Contig9193: 88527-98024
Sequence    

Annotation

kegg
ID rcu:RCOM_1620390
description ATP-dependent RNA helicase, putative (EC:3.4.22.44)
nr
ID XP_012067796.1
description PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
swissprot
ID Q14562
description ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
trembl
ID A0A067KYU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15724 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62344: 88511-94774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_120 0.0 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
2 Hb_001343_040 0.0783480726 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
3 Hb_001449_040 0.0808378541 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
4 Hb_001442_060 0.0833739967 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
5 Hb_006373_010 0.0839181785 - - Potassium transporter 11 [Gossypium arboreum]
6 Hb_007083_030 0.0844992785 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
7 Hb_001511_240 0.0852940281 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
8 Hb_009476_040 0.0870664849 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007441_130 0.0873439247 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002815_030 0.0876492906 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
11 Hb_004327_040 0.0878736287 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
12 Hb_056691_060 0.0905667235 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
13 Hb_012760_100 0.0918355365 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
14 Hb_007123_030 0.093203558 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
15 Hb_000008_290 0.0933469849 - - PREDICTED: protein SAND [Jatropha curcas]
16 Hb_000780_190 0.0937956773 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
17 Hb_025194_040 0.0938174104 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
18 Hb_012395_140 0.0940131483 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
19 Hb_002784_110 0.0944855853 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
20 Hb_000613_050 0.0954030885 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009193_120 Hb_009193_120 Hb_001343_040 Hb_001343_040 Hb_009193_120--Hb_001343_040 Hb_001449_040 Hb_001449_040 Hb_009193_120--Hb_001449_040 Hb_001442_060 Hb_001442_060 Hb_009193_120--Hb_001442_060 Hb_006373_010 Hb_006373_010 Hb_009193_120--Hb_006373_010 Hb_007083_030 Hb_007083_030 Hb_009193_120--Hb_007083_030 Hb_001511_240 Hb_001511_240 Hb_009193_120--Hb_001511_240 Hb_002815_030 Hb_002815_030 Hb_001343_040--Hb_002815_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_000592_030 Hb_000592_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020 Hb_000062_020 Hb_000062_020 Hb_001442_060--Hb_000062_020 Hb_000238_030 Hb_000238_030 Hb_001442_060--Hb_000238_030 Hb_000099_030 Hb_000099_030 Hb_001442_060--Hb_000099_030 Hb_001442_060--Hb_056691_060 Hb_000001_170 Hb_000001_170 Hb_001442_060--Hb_000001_170 Hb_012760_100 Hb_012760_100 Hb_001442_060--Hb_012760_100 Hb_011609_140 Hb_011609_140 Hb_006373_010--Hb_011609_140 Hb_006373_010--Hb_001511_240 Hb_006373_010--Hb_007083_030 Hb_000044_040 Hb_000044_040 Hb_006373_010--Hb_000044_040 Hb_021443_040 Hb_021443_040 Hb_006373_010--Hb_021443_040 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340 Hb_007445_010 Hb_007445_010 Hb_001511_240--Hb_007445_010 Hb_001511_240--Hb_007083_030 Hb_007336_010 Hb_007336_010 Hb_001511_240--Hb_007336_010 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.15064 8.53511 3.20705 7.4126 7.64045 9.9406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.21184 4.04754 3.95084 8.20771 9.46083

CAGE analysis