Hb_006373_010

Information

Type -
Description -
Location Contig6373: 10921-19635
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_336243
description hypothetical protein
nr
ID KHG01691.1
description Potassium transporter 11 [Gossypium arboreum]
swissprot
ID O64769
description Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=2 SV=1
trembl
ID A0A0B0MRX8
description Potassium transporter 11 OS=Gossypium arboreum GN=F383_22242 PE=4 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51989: 10941-56180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006373_010 0.0 - - Potassium transporter 11 [Gossypium arboreum]
2 Hb_011609_140 0.08109338 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
3 Hb_001511_240 0.0813294773 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
4 Hb_009193_120 0.0839181785 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
5 Hb_007083_030 0.0849524224 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_000044_040 0.0866696428 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_021443_040 0.0910788807 - - acc synthase, putative [Ricinus communis]
8 Hb_007441_130 0.0913003856 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001500_050 0.0935967163 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
10 Hb_011537_050 0.0940237274 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
11 Hb_001123_260 0.0947280795 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
12 Hb_005489_020 0.0975450388 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000025_410 0.0995410959 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
14 Hb_005779_080 0.1024646659 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
15 Hb_006520_040 0.1030254548 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
16 Hb_003438_050 0.1036439436 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
17 Hb_001227_030 0.1038560463 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
18 Hb_002864_010 0.1048643242 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
19 Hb_000134_270 0.1048774736 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
20 Hb_000023_330 0.104940953 - - RNA recognition motif-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006373_010 Hb_006373_010 Hb_011609_140 Hb_011609_140 Hb_006373_010--Hb_011609_140 Hb_001511_240 Hb_001511_240 Hb_006373_010--Hb_001511_240 Hb_009193_120 Hb_009193_120 Hb_006373_010--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_006373_010--Hb_007083_030 Hb_000044_040 Hb_000044_040 Hb_006373_010--Hb_000044_040 Hb_021443_040 Hb_021443_040 Hb_006373_010--Hb_021443_040 Hb_000679_310 Hb_000679_310 Hb_011609_140--Hb_000679_310 Hb_000484_030 Hb_000484_030 Hb_011609_140--Hb_000484_030 Hb_001922_150 Hb_001922_150 Hb_011609_140--Hb_001922_150 Hb_001635_160 Hb_001635_160 Hb_011609_140--Hb_001635_160 Hb_001751_140 Hb_001751_140 Hb_011609_140--Hb_001751_140 Hb_003680_150 Hb_003680_150 Hb_011609_140--Hb_003680_150 Hb_007445_010 Hb_007445_010 Hb_001511_240--Hb_007445_010 Hb_001511_240--Hb_009193_120 Hb_001511_240--Hb_007083_030 Hb_007336_010 Hb_007336_010 Hb_001511_240--Hb_007336_010 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110 Hb_001343_040 Hb_001343_040 Hb_009193_120--Hb_001343_040 Hb_001449_040 Hb_001449_040 Hb_009193_120--Hb_001449_040 Hb_001442_060 Hb_001442_060 Hb_009193_120--Hb_001442_060 Hb_009193_120--Hb_007083_030 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_002815_030 Hb_002815_030 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_007441_130 Hb_007441_130 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_004097_070 Hb_004097_070 Hb_000044_040--Hb_004097_070 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_005489_020 Hb_005489_020 Hb_021443_040--Hb_005489_020 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_001123_260 Hb_001123_260 Hb_021443_040--Hb_001123_260 Hb_000329_370 Hb_000329_370 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4953 19.2826 9.97137 13.3147 12.1635 18.9245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1962 11.5437 7.43902 14.9495 19.6851

CAGE analysis