Hb_008749_040

Information

Type -
Description -
Location Contig8749: 41790-42197
Sequence    

Annotation

kegg
ID rcu:RCOM_0842980
description nutrient reservoir, putative
nr
ID XP_011038660.1
description PREDICTED: formin-like protein 20 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SJ44
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0842980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61239: 41473-42507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_040 0.0 - - PREDICTED: formin-like protein 20 [Populus euphratica]
2 Hb_011671_250 0.1455197022 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000731_170 0.1492066041 - - PREDICTED: phospholipase A I [Jatropha curcas]
4 Hb_002307_270 0.155987815 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_009780_030 0.1568883885 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
6 Hb_000152_370 0.1585005797 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
7 Hb_000836_380 0.1595299593 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
8 Hb_006775_130 0.1635243721 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
9 Hb_000329_340 0.1638470537 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002043_040 0.1685565 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
11 Hb_000110_140 0.16999686 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
12 Hb_000917_230 0.170410419 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
13 Hb_006502_060 0.1706102556 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000186_050 0.1711247698 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
15 Hb_010128_100 0.1715025245 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
16 Hb_000061_120 0.1717358557 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
17 Hb_005784_040 0.1717883876 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
18 Hb_005396_150 0.1724844647 - - protein binding protein, putative [Ricinus communis]
19 Hb_001396_200 0.1726540495 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
20 Hb_002995_050 0.1727265872 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008749_040 Hb_008749_040 Hb_011671_250 Hb_011671_250 Hb_008749_040--Hb_011671_250 Hb_000731_170 Hb_000731_170 Hb_008749_040--Hb_000731_170 Hb_002307_270 Hb_002307_270 Hb_008749_040--Hb_002307_270 Hb_009780_030 Hb_009780_030 Hb_008749_040--Hb_009780_030 Hb_000152_370 Hb_000152_370 Hb_008749_040--Hb_000152_370 Hb_000836_380 Hb_000836_380 Hb_008749_040--Hb_000836_380 Hb_002078_130 Hb_002078_130 Hb_011671_250--Hb_002078_130 Hb_004109_310 Hb_004109_310 Hb_011671_250--Hb_004109_310 Hb_000808_280 Hb_000808_280 Hb_011671_250--Hb_000808_280 Hb_001571_050 Hb_001571_050 Hb_011671_250--Hb_001571_050 Hb_003376_330 Hb_003376_330 Hb_011671_250--Hb_003376_330 Hb_000015_040 Hb_000015_040 Hb_011671_250--Hb_000015_040 Hb_000847_060 Hb_000847_060 Hb_000731_170--Hb_000847_060 Hb_000161_130 Hb_000161_130 Hb_000731_170--Hb_000161_130 Hb_027472_140 Hb_027472_140 Hb_000731_170--Hb_027472_140 Hb_000917_230 Hb_000917_230 Hb_000731_170--Hb_000917_230 Hb_002461_060 Hb_002461_060 Hb_000731_170--Hb_002461_060 Hb_004781_010 Hb_004781_010 Hb_000731_170--Hb_004781_010 Hb_002307_270--Hb_000836_380 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_001405_160 Hb_001405_160 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_000913_020 Hb_000913_020 Hb_009780_030--Hb_000913_020 Hb_000768_200 Hb_000768_200 Hb_009780_030--Hb_000768_200 Hb_007508_060 Hb_007508_060 Hb_009780_030--Hb_007508_060 Hb_000207_330 Hb_000207_330 Hb_009780_030--Hb_000207_330 Hb_028697_010 Hb_028697_010 Hb_009780_030--Hb_028697_010 Hb_001163_100 Hb_001163_100 Hb_009780_030--Hb_001163_100 Hb_028207_060 Hb_028207_060 Hb_000152_370--Hb_028207_060 Hb_007445_010 Hb_007445_010 Hb_000152_370--Hb_007445_010 Hb_000429_050 Hb_000429_050 Hb_000152_370--Hb_000429_050 Hb_001511_240 Hb_001511_240 Hb_000152_370--Hb_001511_240 Hb_012940_030 Hb_012940_030 Hb_000152_370--Hb_012940_030 Hb_000836_380--Hb_001405_160 Hb_000017_220 Hb_000017_220 Hb_000836_380--Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0605 36.9462 4.54339 55.9574 12.696 18.7333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3499 44.0128 22.086 27.0892 41.8669

CAGE analysis