Hb_000731_170

Information

Type -
Description -
Location Contig731: 168945-178505
Sequence    

Annotation

kegg
ID rcu:RCOM_0905300
description hypothetical protein
nr
ID XP_012091380.1
description PREDICTED: phospholipase A I [Jatropha curcas]
swissprot
ID F4HX15
description Phospholipase A I OS=Arabidopsis thaliana GN=PLA1 PE=2 SV=1
trembl
ID A0A067JMP9
description Patatin OS=Jatropha curcas GN=JCGZ_21245 PE=3 SV=1
Gene Ontology
ID GO:0004620
description phospholipase a i isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55977: 178132-178324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_170 0.0 - - PREDICTED: phospholipase A I [Jatropha curcas]
2 Hb_000847_060 0.1044426738 - - hypothetical protein [Jatropha curcas]
3 Hb_000161_130 0.1107438614 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
4 Hb_027472_140 0.1169848639 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
5 Hb_000917_230 0.1174378625 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
6 Hb_002461_060 0.1178275194 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
7 Hb_004781_010 0.118497005 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
8 Hb_006502_060 0.1186756165 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006059_040 0.1255175565 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
10 Hb_000840_200 0.1260191827 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
11 Hb_000087_070 0.1264379635 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
12 Hb_000078_120 0.126850189 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
13 Hb_000028_370 0.1281810188 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
14 Hb_002994_030 0.128974944 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
15 Hb_010423_030 0.129248042 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_189216_020 0.1295845631 - - PREDICTED: translin [Jatropha curcas]
17 Hb_004607_090 0.1295939929 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
18 Hb_002995_050 0.1298423243 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
19 Hb_109484_010 0.1300247674 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_017987_050 0.1312574241 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000731_170 Hb_000731_170 Hb_000847_060 Hb_000847_060 Hb_000731_170--Hb_000847_060 Hb_000161_130 Hb_000161_130 Hb_000731_170--Hb_000161_130 Hb_027472_140 Hb_027472_140 Hb_000731_170--Hb_027472_140 Hb_000917_230 Hb_000917_230 Hb_000731_170--Hb_000917_230 Hb_002461_060 Hb_002461_060 Hb_000731_170--Hb_002461_060 Hb_004781_010 Hb_004781_010 Hb_000731_170--Hb_004781_010 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_000155_160 Hb_000155_160 Hb_000847_060--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000847_060--Hb_000161_130 Hb_000310_020 Hb_000310_020 Hb_000161_130--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000161_130--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000161_130--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_000161_130--Hb_017987_050 Hb_004324_090 Hb_004324_090 Hb_000161_130--Hb_004324_090 Hb_157023_020 Hb_157023_020 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_011909_120 Hb_011909_120 Hb_002461_060--Hb_011909_120 Hb_000462_170 Hb_000462_170 Hb_002461_060--Hb_000462_170 Hb_000487_210 Hb_000487_210 Hb_002461_060--Hb_000487_210 Hb_000340_400 Hb_000340_400 Hb_002461_060--Hb_000340_400 Hb_004450_040 Hb_004450_040 Hb_002461_060--Hb_004450_040 Hb_006520_040 Hb_006520_040 Hb_002461_060--Hb_006520_040 Hb_010775_040 Hb_010775_040 Hb_004781_010--Hb_010775_040 Hb_029243_030 Hb_029243_030 Hb_004781_010--Hb_029243_030 Hb_004781_010--Hb_000078_120 Hb_004781_010--Hb_000917_230 Hb_006452_100 Hb_006452_100 Hb_004781_010--Hb_006452_100 Hb_023001_040 Hb_023001_040 Hb_004781_010--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.405959 0.642567 0.313991 0.615522 0.196806 0.400445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.639542 0.860735 0.210501 0.438884 0.642088

CAGE analysis