Hb_002461_060

Information

Type -
Description -
Location Contig2461: 60361-66380
Sequence    

Annotation

kegg
ID rcu:RCOM_1345900
description DNA methyltransferase 1-associated protein, putative
nr
ID XP_012082946.1
description PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
swissprot
ID Q8VZL6
description SWR1-complex protein 4 OS=Arabidopsis thaliana GN=SWC4 PE=1 SV=1
trembl
ID B9RN98
description DNA methyltransferase 1-associated protein, putative OS=Ricinus communis GN=RCOM_1345900 PE=4 SV=1
Gene Ontology
ID GO:0035267
description myb-like transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25602: 62016-62361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002461_060 0.0 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
2 Hb_011909_120 0.0800391061 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
3 Hb_000462_170 0.0809247383 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000487_210 0.0950625861 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_000340_400 0.0963472739 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_004450_040 0.0972372113 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
7 Hb_006520_040 0.0972864177 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
8 Hb_001225_040 0.0974000012 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
9 Hb_009659_050 0.0986425065 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
10 Hb_002217_510 0.1022255247 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006059_040 0.1035855756 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
12 Hb_004837_180 0.1039353441 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
13 Hb_001089_030 0.1039374729 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_014109_040 0.1041758333 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
15 Hb_011537_050 0.1043667036 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
16 Hb_000175_100 0.104432662 - - protein kinase, putative [Ricinus communis]
17 Hb_000416_110 0.1053096979 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
18 Hb_000236_400 0.107573538 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
19 Hb_000126_010 0.1078143597 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
20 Hb_000069_380 0.1079895882 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002461_060 Hb_002461_060 Hb_011909_120 Hb_011909_120 Hb_002461_060--Hb_011909_120 Hb_000462_170 Hb_000462_170 Hb_002461_060--Hb_000462_170 Hb_000487_210 Hb_000487_210 Hb_002461_060--Hb_000487_210 Hb_000340_400 Hb_000340_400 Hb_002461_060--Hb_000340_400 Hb_004450_040 Hb_004450_040 Hb_002461_060--Hb_004450_040 Hb_006520_040 Hb_006520_040 Hb_002461_060--Hb_006520_040 Hb_007423_040 Hb_007423_040 Hb_011909_120--Hb_007423_040 Hb_005730_120 Hb_005730_120 Hb_011909_120--Hb_005730_120 Hb_000126_010 Hb_000126_010 Hb_011909_120--Hb_000126_010 Hb_002217_510 Hb_002217_510 Hb_011909_120--Hb_002217_510 Hb_001123_030 Hb_001123_030 Hb_011909_120--Hb_001123_030 Hb_000462_170--Hb_004450_040 Hb_000708_030 Hb_000708_030 Hb_000462_170--Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000462_170--Hb_006831_140 Hb_000317_050 Hb_000317_050 Hb_000462_170--Hb_000317_050 Hb_001301_150 Hb_001301_150 Hb_000462_170--Hb_001301_150 Hb_001946_400 Hb_001946_400 Hb_000462_170--Hb_001946_400 Hb_002585_040 Hb_002585_040 Hb_000487_210--Hb_002585_040 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_000075_040 Hb_000075_040 Hb_004450_040--Hb_000075_040 Hb_004450_040--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_004450_040--Hb_001021_150 Hb_004450_040--Hb_001301_150 Hb_004450_040--Hb_000708_030 Hb_001225_040 Hb_001225_040 Hb_006520_040--Hb_001225_040 Hb_000981_030 Hb_000981_030 Hb_006520_040--Hb_000981_030 Hb_000920_300 Hb_000920_300 Hb_006520_040--Hb_000920_300 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_003913_070 Hb_003913_070 Hb_006520_040--Hb_003913_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75607 2.00438 1.43747 1.37861 1.28415 1.33543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8721 2.25079 0.467823 1.72191 1.62001

CAGE analysis