Hb_002217_510

Information

Type -
Description -
Location Contig2217: 446033-452397
Sequence    

Annotation

kegg
ID rcu:RCOM_1000720
description hypothetical protein
nr
ID XP_002519243.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22967: 452754-455327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_510 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000111_210 0.0854471217 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
3 Hb_007423_040 0.0865474145 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
4 Hb_000227_090 0.0905275397 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
5 Hb_011909_120 0.0916781559 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_008103_070 0.0924695657 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
7 Hb_000563_230 0.093784606 - - phospholipase d zeta, putative [Ricinus communis]
8 Hb_001227_030 0.0967639925 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
9 Hb_002585_040 0.0974313541 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
10 Hb_003494_200 0.097894794 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
11 Hb_000126_010 0.0983723809 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
12 Hb_000462_170 0.098390347 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002890_290 0.0989600235 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
14 Hb_004453_130 0.1010348339 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
15 Hb_012506_050 0.1010569707 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
16 Hb_007576_080 0.1011979364 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
17 Hb_004355_030 0.1018869674 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
18 Hb_000005_220 0.1019834751 - - DNA ligase 1, partial [Glycine soja]
19 Hb_002461_060 0.1022255247 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
20 Hb_012753_170 0.1035738405 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_510 Hb_002217_510 Hb_000111_210 Hb_000111_210 Hb_002217_510--Hb_000111_210 Hb_007423_040 Hb_007423_040 Hb_002217_510--Hb_007423_040 Hb_000227_090 Hb_000227_090 Hb_002217_510--Hb_000227_090 Hb_011909_120 Hb_011909_120 Hb_002217_510--Hb_011909_120 Hb_008103_070 Hb_008103_070 Hb_002217_510--Hb_008103_070 Hb_000563_230 Hb_000563_230 Hb_002217_510--Hb_000563_230 Hb_002374_010 Hb_002374_010 Hb_000111_210--Hb_002374_010 Hb_021576_100 Hb_021576_100 Hb_000111_210--Hb_021576_100 Hb_000308_030 Hb_000308_030 Hb_000111_210--Hb_000308_030 Hb_000340_400 Hb_000340_400 Hb_000111_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_000111_210--Hb_142368_010 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_000130_410 Hb_000130_410 Hb_000227_090--Hb_000130_410 Hb_000120_170 Hb_000120_170 Hb_000227_090--Hb_000120_170 Hb_001541_230 Hb_001541_230 Hb_000227_090--Hb_001541_230 Hb_000000_270 Hb_000000_270 Hb_000227_090--Hb_000000_270 Hb_154114_010 Hb_154114_010 Hb_000227_090--Hb_154114_010 Hb_002461_060 Hb_002461_060 Hb_011909_120--Hb_002461_060 Hb_011909_120--Hb_007423_040 Hb_011909_120--Hb_005730_120 Hb_000126_010 Hb_000126_010 Hb_011909_120--Hb_000126_010 Hb_001123_030 Hb_001123_030 Hb_011909_120--Hb_001123_030 Hb_012753_170 Hb_012753_170 Hb_008103_070--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_008103_070--Hb_002890_120 Hb_001433_070 Hb_001433_070 Hb_008103_070--Hb_001433_070 Hb_005588_090 Hb_005588_090 Hb_008103_070--Hb_005588_090 Hb_002175_030 Hb_002175_030 Hb_008103_070--Hb_002175_030 Hb_032202_120 Hb_032202_120 Hb_008103_070--Hb_032202_120 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_000563_230--Hb_008453_140 Hb_014109_040 Hb_014109_040 Hb_000563_230--Hb_014109_040 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000563_230--Hb_000340_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72686 3.61831 3.326 1.96888 3.85542 3.24285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43988 4.16209 1.5332 3.74358 2.35433

CAGE analysis