Hb_000111_210

Information

Type -
Description -
Location Contig111: 223247-226144
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06590g
description POPTRDRAFT_1065742; hypothetical protein
nr
ID XP_012068680.1
description PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
swissprot
ID Q9M7X9
description Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=CITRX PE=1 SV=1
trembl
ID A0A067L8W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24543 PE=4 SV=1
Gene Ontology
ID GO:0009295
description thioredoxin-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03389: 221892-222561 , PASA_asmbl_03390: 221909-222416 , PASA_asmbl_03391: 225153-225891 , PASA_asmbl_03392: 225892-226094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_210 0.0 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
2 Hb_002374_010 0.0818449349 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
3 Hb_002217_510 0.0854471217 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021576_100 0.0988069095 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000308_030 0.1016541586 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
6 Hb_000340_400 0.1023573469 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_142368_010 0.1025629339 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
8 Hb_001862_210 0.1037601891 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
9 Hb_002641_030 0.1048126752 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
10 Hb_001089_110 0.1061852159 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000563_230 0.1064000441 - - phospholipase d zeta, putative [Ricinus communis]
12 Hb_000077_320 0.1065331927 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
13 Hb_001227_030 0.1070169628 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
14 Hb_009659_050 0.1077219246 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
15 Hb_000175_100 0.108473401 - - protein kinase, putative [Ricinus communis]
16 Hb_000181_110 0.1091805422 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
17 Hb_079526_030 0.1092329208 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
18 Hb_008103_070 0.1104360009 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
19 Hb_007054_060 0.1108675698 - - -
20 Hb_000160_350 0.1116837888 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]

Gene co-expression network

sample Hb_000111_210 Hb_000111_210 Hb_002374_010 Hb_002374_010 Hb_000111_210--Hb_002374_010 Hb_002217_510 Hb_002217_510 Hb_000111_210--Hb_002217_510 Hb_021576_100 Hb_021576_100 Hb_000111_210--Hb_021576_100 Hb_000308_030 Hb_000308_030 Hb_000111_210--Hb_000308_030 Hb_000340_400 Hb_000340_400 Hb_000111_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_000111_210--Hb_142368_010 Hb_000077_320 Hb_000077_320 Hb_002374_010--Hb_000077_320 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_011537_050 Hb_011537_050 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_007423_040 Hb_007423_040 Hb_002217_510--Hb_007423_040 Hb_000227_090 Hb_000227_090 Hb_002217_510--Hb_000227_090 Hb_011909_120 Hb_011909_120 Hb_002217_510--Hb_011909_120 Hb_008103_070 Hb_008103_070 Hb_002217_510--Hb_008103_070 Hb_000563_230 Hb_000563_230 Hb_002217_510--Hb_000563_230 Hb_021576_100--Hb_142368_010 Hb_021576_100--Hb_000308_030 Hb_005337_090 Hb_005337_090 Hb_021576_100--Hb_005337_090 Hb_073973_130 Hb_073973_130 Hb_021576_100--Hb_073973_130 Hb_000005_220 Hb_000005_220 Hb_021576_100--Hb_000005_220 Hb_079526_030 Hb_079526_030 Hb_021576_100--Hb_079526_030 Hb_000308_030--Hb_005337_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_152175_010 Hb_152175_010 Hb_142368_010--Hb_152175_010 Hb_142368_010--Hb_003001_080 Hb_001227_030 Hb_001227_030 Hb_142368_010--Hb_001227_030 Hb_005137_050 Hb_005137_050 Hb_142368_010--Hb_005137_050 Hb_001862_210 Hb_001862_210 Hb_142368_010--Hb_001862_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.82024 11.0383 10.3328 2.91179 8.59793 9.57317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2913 10.472 4.49756 9.54691 4.77876

CAGE analysis