Hb_000445_470

Information

Type -
Description -
Location Contig445: 581014-585905
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15600g
description POPTRDRAFT_571937; hypothetical protein
nr
ID XP_012077785.1
description PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q96EX2
description RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2
trembl
ID A0A067LB93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17279 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42926: 580688-581671 , PASA_asmbl_42927: 581453-585893 , PASA_asmbl_42929: 584138-585893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_470 0.0 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
2 Hb_000069_480 0.0829002791 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001408_110 0.0876194934 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
4 Hb_005381_020 0.0913807721 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
5 Hb_004128_130 0.0926508553 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
6 Hb_001258_100 0.0933245596 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
7 Hb_000671_080 0.0952264033 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
8 Hb_002869_050 0.0953509045 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
9 Hb_000046_570 0.0954128937 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
10 Hb_007062_040 0.0955018293 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
11 Hb_027472_140 0.0989947344 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
12 Hb_000089_180 0.1000529968 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
13 Hb_002893_040 0.1004903847 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
14 Hb_003912_040 0.1023356355 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
15 Hb_001241_010 0.1033113359 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000731_220 0.104479539 - - PREDICTED: derlin-2.2 [Jatropha curcas]
17 Hb_004143_100 0.1048312791 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002413_010 0.1060992478 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_032990_010 0.106564368 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
20 Hb_002983_080 0.1070240285 - - acetylornithine aminotransferase, partial [Prunus persica]

Gene co-expression network

sample Hb_000445_470 Hb_000445_470 Hb_000069_480 Hb_000069_480 Hb_000445_470--Hb_000069_480 Hb_001408_110 Hb_001408_110 Hb_000445_470--Hb_001408_110 Hb_005381_020 Hb_005381_020 Hb_000445_470--Hb_005381_020 Hb_004128_130 Hb_004128_130 Hb_000445_470--Hb_004128_130 Hb_001258_100 Hb_001258_100 Hb_000445_470--Hb_001258_100 Hb_000671_080 Hb_000671_080 Hb_000445_470--Hb_000671_080 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_001489_100 Hb_001489_100 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000418_010 Hb_000418_010 Hb_000069_480--Hb_000418_010 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_000089_180 Hb_000089_180 Hb_001408_110--Hb_000089_180 Hb_004037_020 Hb_004037_020 Hb_001408_110--Hb_004037_020 Hb_007839_020 Hb_007839_020 Hb_001408_110--Hb_007839_020 Hb_001241_010 Hb_001241_010 Hb_001408_110--Hb_001241_010 Hb_010407_080 Hb_010407_080 Hb_001408_110--Hb_010407_080 Hb_000046_570 Hb_000046_570 Hb_005381_020--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_005381_020--Hb_007062_040 Hb_000390_250 Hb_000390_250 Hb_005381_020--Hb_000390_250 Hb_000635_040 Hb_000635_040 Hb_005381_020--Hb_000635_040 Hb_001366_090 Hb_001366_090 Hb_005381_020--Hb_001366_090 Hb_002311_380 Hb_002311_380 Hb_005381_020--Hb_002311_380 Hb_004128_130--Hb_000089_180 Hb_004143_100 Hb_004143_100 Hb_004128_130--Hb_004143_100 Hb_004128_130--Hb_000046_570 Hb_015026_130 Hb_015026_130 Hb_004128_130--Hb_015026_130 Hb_004109_230 Hb_004109_230 Hb_004128_130--Hb_004109_230 Hb_000521_330 Hb_000521_330 Hb_004128_130--Hb_000521_330 Hb_002893_040 Hb_002893_040 Hb_001258_100--Hb_002893_040 Hb_001258_100--Hb_003912_040 Hb_001225_030 Hb_001225_030 Hb_001258_100--Hb_001225_030 Hb_002413_010 Hb_002413_010 Hb_001258_100--Hb_002413_010 Hb_003096_060 Hb_003096_060 Hb_001258_100--Hb_003096_060 Hb_001258_100--Hb_007062_040 Hb_001257_100 Hb_001257_100 Hb_000671_080--Hb_001257_100 Hb_003599_030 Hb_003599_030 Hb_000671_080--Hb_003599_030 Hb_000671_080--Hb_024650_080 Hb_000671_080--Hb_000418_010 Hb_003849_220 Hb_003849_220 Hb_000671_080--Hb_003849_220 Hb_000926_150 Hb_000926_150 Hb_000671_080--Hb_000926_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6256 4.87683 3.00419 4.99297 2.1161 2.55607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3865 2.89951 0.84932 2.31384 2.98679

CAGE analysis