Hb_011671_250

Information

Type -
Description -
Location Contig11671: 218677-226777
Sequence    

Annotation

kegg
ID rcu:RCOM_1501670
description ubiquitin-protein ligase, putative
nr
ID XP_002511008.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID O22161
description Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1
trembl
ID B9R9Y3
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1501670 PE=4 SV=1
Gene Ontology
ID GO:0016874
description protein arabidillo 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05161: 218910-219187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_250 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002078_130 0.0804406767 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
3 Hb_004109_310 0.0892402951 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
4 Hb_000808_280 0.0959611475 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001571_050 0.1014095503 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
6 Hb_003376_330 0.1046768713 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
7 Hb_000015_040 0.1054973501 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
8 Hb_002685_110 0.1060948031 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_073973_100 0.1068068099 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
10 Hb_001579_220 0.1071893108 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
11 Hb_000930_030 0.1073611536 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
12 Hb_003761_010 0.1085581226 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_000023_280 0.1096048716 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
14 Hb_006913_010 0.1098206769 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
15 Hb_001703_060 0.1101124165 - - protein kinase, putative [Ricinus communis]
16 Hb_001205_240 0.1105682514 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
17 Hb_005188_080 0.1108402093 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_002110_190 0.1115417461 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
19 Hb_000028_370 0.1119906263 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
20 Hb_002893_080 0.1121509619 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_250 Hb_011671_250 Hb_002078_130 Hb_002078_130 Hb_011671_250--Hb_002078_130 Hb_004109_310 Hb_004109_310 Hb_011671_250--Hb_004109_310 Hb_000808_280 Hb_000808_280 Hb_011671_250--Hb_000808_280 Hb_001571_050 Hb_001571_050 Hb_011671_250--Hb_001571_050 Hb_003376_330 Hb_003376_330 Hb_011671_250--Hb_003376_330 Hb_000015_040 Hb_000015_040 Hb_011671_250--Hb_000015_040 Hb_000395_190 Hb_000395_190 Hb_002078_130--Hb_000395_190 Hb_000329_470 Hb_000329_470 Hb_002078_130--Hb_000329_470 Hb_003761_010 Hb_003761_010 Hb_002078_130--Hb_003761_010 Hb_001369_730 Hb_001369_730 Hb_002078_130--Hb_001369_730 Hb_000099_080 Hb_000099_080 Hb_002078_130--Hb_000099_080 Hb_000260_270 Hb_000260_270 Hb_002078_130--Hb_000260_270 Hb_006913_010 Hb_006913_010 Hb_004109_310--Hb_006913_010 Hb_007017_030 Hb_007017_030 Hb_004109_310--Hb_007017_030 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_000630_050 Hb_000630_050 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_003693_070 Hb_003693_070 Hb_000808_280--Hb_003693_070 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_060 Hb_000120_060 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003376_330--Hb_003693_070 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_000015_040--Hb_003761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58836 1.10711 0.449574 1.98256 1.13267 1.14658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11254 1.5142 1.13561 1.46514 1.13102

CAGE analysis