Hb_003376_330

Information

Type -
Description -
Location Contig3376: 212915-216923
Sequence    

Annotation

kegg
ID egr:104449011
description gamma carbonic anhydrase 1, mitochondrial
nr
ID XP_010061298.1
description PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
swissprot
ID Q9FWR5
description Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1
trembl
ID A0A059BQC4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01883 PE=4 SV=1
Gene Ontology
ID GO:0005747
description gamma carbonic anhydrase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35359: 212962-216832
cDNA
(Sanger)
(ID:Location)		 029_F11.ab1: 212962-216409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_330 0.0 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
2 Hb_000270_490 0.0537542245 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
3 Hb_073973_100 0.0579765901 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
4 Hb_023732_030 0.0694612115 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
5 Hb_002232_410 0.0731067312 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
6 Hb_026198_070 0.0742718114 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
7 Hb_003693_070 0.0751531475 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
8 Hb_000556_120 0.0761158368 - - Spastin, putative [Ricinus communis]
9 Hb_001252_120 0.0761585338 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
10 Hb_001860_030 0.0801040127 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
11 Hb_001366_370 0.0810953449 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
12 Hb_000120_060 0.0812503524 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
13 Hb_005730_120 0.0813545699 - - PREDICTED: protein WHI4 [Jatropha curcas]
14 Hb_006588_170 0.0820873045 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
15 Hb_002110_190 0.0822199168 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
16 Hb_032808_010 0.0828471231 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
17 Hb_002303_070 0.0829783359 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
18 Hb_000640_170 0.0834445049 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
19 Hb_000603_150 0.0839922644 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
20 Hb_008511_120 0.0849720814 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_330 Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_073973_100 Hb_073973_100 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_000270_490--Hb_073973_100 Hb_000270_490--Hb_003693_070 Hb_000270_490--Hb_026198_070 Hb_004127_030 Hb_004127_030 Hb_000270_490--Hb_004127_030 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_023732_030--Hb_000556_120 Hb_000907_110 Hb_000907_110 Hb_023732_030--Hb_000907_110 Hb_000431_170 Hb_000431_170 Hb_023732_030--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_023732_030--Hb_002197_050 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3322 30.4121 36.3297 55.991 39.7463 42.6472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.1245 39.8596 35.293 51.0858 29.0726

CAGE analysis