Hb_001160_070

Information

Type -
Description -
Location Contig1160: 33725-38087
Sequence    

Annotation

kegg
ID rcu:RCOM_1168950
description hypothetical protein
nr
ID XP_012069872.1
description PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L779
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02358 PE=4 SV=1
Gene Ontology
ID GO:0005515
description peroxisomal membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04920: 34457-35959 , PASA_asmbl_04921: 34940-35407 , PASA_asmbl_04922: 36025-37562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_070 0.0 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
2 Hb_000334_260 0.0793923478 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
3 Hb_002995_040 0.0970370297 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
4 Hb_001497_060 0.1002800633 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
5 Hb_083799_010 0.10400741 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_001307_240 0.1042236241 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
7 Hb_002836_100 0.104560942 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
8 Hb_002272_170 0.1077274471 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
9 Hb_001552_030 0.1082646793 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_007747_170 0.1101410391 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_003020_100 0.1108736068 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
12 Hb_002596_060 0.1116536896 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001141_310 0.115090981 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
14 Hb_075315_010 0.1158631151 - - ornithine aminotransferase [Camellia sinensis]
15 Hb_001500_100 0.1171672263 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006006_040 0.1179623784 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
17 Hb_006502_030 0.1182164854 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
18 Hb_019840_030 0.1193389786 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
19 Hb_013358_050 0.1198163339 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_001662_050 0.1208562053 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001160_070 Hb_001160_070 Hb_000334_260 Hb_000334_260 Hb_001160_070--Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_001160_070--Hb_002995_040 Hb_001497_060 Hb_001497_060 Hb_001160_070--Hb_001497_060 Hb_083799_010 Hb_083799_010 Hb_001160_070--Hb_083799_010 Hb_001307_240 Hb_001307_240 Hb_001160_070--Hb_001307_240 Hb_002836_100 Hb_002836_100 Hb_001160_070--Hb_002836_100 Hb_000334_260--Hb_002995_040 Hb_000334_260--Hb_001497_060 Hb_007747_170 Hb_007747_170 Hb_000334_260--Hb_007747_170 Hb_000334_260--Hb_001307_240 Hb_002874_090 Hb_002874_090 Hb_000334_260--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_002995_040--Hb_001558_040 Hb_000579_130 Hb_000579_130 Hb_002995_040--Hb_000579_130 Hb_002995_040--Hb_001307_240 Hb_004450_070 Hb_004450_070 Hb_002995_040--Hb_004450_070 Hb_000085_450 Hb_000085_450 Hb_002995_040--Hb_000085_450 Hb_075315_010 Hb_075315_010 Hb_001497_060--Hb_075315_010 Hb_000723_010 Hb_000723_010 Hb_001497_060--Hb_000723_010 Hb_004837_280 Hb_004837_280 Hb_001497_060--Hb_004837_280 Hb_013358_050 Hb_013358_050 Hb_001497_060--Hb_013358_050 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_001307_240--Hb_001558_040 Hb_001307_240--Hb_004837_280 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_002836_100--Hb_007426_140 Hb_002836_100--Hb_083799_010 Hb_002836_100--Hb_000395_220 Hb_002836_100--Hb_075315_010 Hb_033772_070 Hb_033772_070 Hb_002836_100--Hb_033772_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62548 2.88417 2.19969 4.0154 1.20743 1.8984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2806 0.693503 1.43141 5.09152 1.66607

CAGE analysis