Hb_000362_180

Information

Type -
Description -
Location Contig362: 175574-178750
Sequence    

Annotation

kegg
ID osa:4339317
description Os05g0515900
nr
ID KHG18564.1
description Pdap1 [Gossypium arboreum]
swissprot
ID Q62785
description 28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus GN=Pdap1 PE=1 SV=1
trembl
ID W5CB88
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0005829
description 28 kda heat- and acid-stable phospho

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37215: 175343-185965 , PASA_asmbl_37216: 175355-186013
cDNA
(Sanger)
(ID:Location)		 019_N11.ab1: 175355-185965 , 037_L11.ab1: 175355-186013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_180 0.0 - - Pdap1 [Gossypium arboreum]
2 Hb_004176_070 0.1125245432 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
3 Hb_059480_010 0.1152604881 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_000115_080 0.1190034739 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
5 Hb_000510_300 0.1283442935 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
6 Hb_004032_030 0.1312562566 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
7 Hb_124373_010 0.132142228 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
8 Hb_001141_420 0.1371419926 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_000022_050 0.138231097 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
10 Hb_005000_330 0.1433519691 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000994_120 0.1454499545 - - unknown [Populus trichocarpa]
12 Hb_002660_150 0.1457701341 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
13 Hb_002445_060 0.1476373697 - - arf gtpase-activating protein, putative [Ricinus communis]
14 Hb_010810_010 0.1483333449 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
15 Hb_001416_010 0.1494378426 - - Thioredoxin H-type, putative [Ricinus communis]
16 Hb_004044_040 0.1494921027 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
17 Hb_000359_090 0.1509583842 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
18 Hb_004052_040 0.1519768309 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
19 Hb_001269_610 0.1523242346 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
20 Hb_000207_150 0.1525543289 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_180 Hb_000362_180 Hb_004176_070 Hb_004176_070 Hb_000362_180--Hb_004176_070 Hb_059480_010 Hb_059480_010 Hb_000362_180--Hb_059480_010 Hb_000115_080 Hb_000115_080 Hb_000362_180--Hb_000115_080 Hb_000510_300 Hb_000510_300 Hb_000362_180--Hb_000510_300 Hb_004032_030 Hb_004032_030 Hb_000362_180--Hb_004032_030 Hb_124373_010 Hb_124373_010 Hb_000362_180--Hb_124373_010 Hb_005000_330 Hb_005000_330 Hb_004176_070--Hb_005000_330 Hb_002042_150 Hb_002042_150 Hb_004176_070--Hb_002042_150 Hb_000384_070 Hb_000384_070 Hb_004176_070--Hb_000384_070 Hb_004230_020 Hb_004230_020 Hb_004176_070--Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004176_070--Hb_045003_010 Hb_000167_080 Hb_000167_080 Hb_004176_070--Hb_000167_080 Hb_084247_010 Hb_084247_010 Hb_059480_010--Hb_084247_010 Hb_000522_150 Hb_000522_150 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_003929_170 Hb_003929_170 Hb_059480_010--Hb_003929_170 Hb_000107_230 Hb_000107_230 Hb_059480_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_059480_010--Hb_004052_040 Hb_002311_380 Hb_002311_380 Hb_000115_080--Hb_002311_380 Hb_006570_150 Hb_006570_150 Hb_000115_080--Hb_006570_150 Hb_000115_080--Hb_003929_170 Hb_001087_030 Hb_001087_030 Hb_000115_080--Hb_001087_030 Hb_000115_080--Hb_059480_010 Hb_001723_150 Hb_001723_150 Hb_000115_080--Hb_001723_150 Hb_000783_010 Hb_000783_010 Hb_000510_300--Hb_000783_010 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_001427_160 Hb_001427_160 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000720_040 Hb_000720_040 Hb_000510_300--Hb_000720_040 Hb_001366_370 Hb_001366_370 Hb_000510_300--Hb_001366_370 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_000130_270 Hb_000130_270 Hb_124373_010--Hb_000130_270 Hb_000207_150 Hb_000207_150 Hb_124373_010--Hb_000207_150 Hb_002960_150 Hb_002960_150 Hb_124373_010--Hb_002960_150 Hb_124373_010--Hb_003929_170 Hb_000152_600 Hb_000152_600 Hb_124373_010--Hb_000152_600 Hb_000916_070 Hb_000916_070 Hb_124373_010--Hb_000916_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.0618 28.6824 48.2016 94.5022 17.4438 35.6328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.6509 38.3322 20.9506 23.0115 24.9342

CAGE analysis