Hb_005725_080

Information

Type -
Description -
Location Contig5725: 31735-32994
Sequence    

Annotation

kegg
ID rcu:RCOM_1586670
description hypothetical protein
nr
ID XP_012068183.1
description PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
swissprot
ID Q9SY57
description Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1
trembl
ID B9R6X2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1586670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49403: 31607-33228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_080 0.0 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
2 Hb_000442_150 0.1013096657 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
3 Hb_000307_140 0.1122931253 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
4 Hb_000699_140 0.1159188605 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
5 Hb_008246_040 0.1233277489 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
6 Hb_001357_180 0.1243283127 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
7 Hb_000031_060 0.1261534451 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
8 Hb_002950_100 0.1268765173 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
9 Hb_116349_160 0.1280365458 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
10 Hb_000646_050 0.1303469834 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
11 Hb_002671_140 0.1310576959 - - calcium-dependent protein kinase [Hevea brasiliensis]
12 Hb_000976_160 0.131598453 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
13 Hb_002217_240 0.1325655634 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
14 Hb_003862_050 0.1329598096 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
15 Hb_003016_020 0.1330436273 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
16 Hb_007477_080 0.1331911257 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000202_040 0.1332723907 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
18 Hb_004678_040 0.1340347788 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
19 Hb_001357_140 0.1342092565 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000512_060 0.1343435637 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]

Gene co-expression network

sample Hb_005725_080 Hb_005725_080 Hb_000442_150 Hb_000442_150 Hb_005725_080--Hb_000442_150 Hb_000307_140 Hb_000307_140 Hb_005725_080--Hb_000307_140 Hb_000699_140 Hb_000699_140 Hb_005725_080--Hb_000699_140 Hb_008246_040 Hb_008246_040 Hb_005725_080--Hb_008246_040 Hb_001357_180 Hb_001357_180 Hb_005725_080--Hb_001357_180 Hb_000031_060 Hb_000031_060 Hb_005725_080--Hb_000031_060 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000307_140--Hb_000442_150 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_000915_020 Hb_000915_020 Hb_008246_040--Hb_000915_020 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_008246_040--Hb_002671_140 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070 Hb_005000_210 Hb_005000_210 Hb_001357_180--Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_001357_180--Hb_000139_410 Hb_001357_180--Hb_002188_130 Hb_001357_180--Hb_000031_060 Hb_003732_020 Hb_003732_020 Hb_001357_180--Hb_003732_020 Hb_000445_180 Hb_000445_180 Hb_001357_180--Hb_000445_180 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000127_130 Hb_000127_130 Hb_000031_060--Hb_000127_130 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3623 22.2477 18.5821 30.096 19.2244 26.6624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9835 16.7729 45.3724 10.6784 10.1851

CAGE analysis