Hb_005000_210

Information

Type -
Description -
Location Contig5000: 221175-225457
Sequence    

Annotation

kegg
ID csv:101222719
description translation machinery-associated protein 22-like
nr
ID XP_012076942.1
description PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
swissprot
ID O42929
description Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=3 SV=1
trembl
ID A0A067KNI1
description Translation machinery-associated protein 22 OS=Jatropha curcas GN=JCGZ_07411 PE=3 SV=1
Gene Ontology
ID GO:0005840
description translation machinery-associated protein 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45822: 221226-225366
cDNA
(Sanger)
(ID:Location)		 025_D18.ab1: 221226-225091 , 050_N10.ab1: 221284-225125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_210 0.0 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
2 Hb_000139_410 0.0613553404 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
3 Hb_002188_130 0.0751587311 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
4 Hb_000866_270 0.076782968 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
5 Hb_000367_200 0.0770248459 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
6 Hb_023226_040 0.0776921227 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
7 Hb_003078_040 0.0795784785 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
8 Hb_025645_010 0.0798861556 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
9 Hb_002685_140 0.0826667576 - - PREDICTED: membrin-11 [Jatropha curcas]
10 Hb_003994_180 0.0873922096 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
11 Hb_001357_180 0.0875564297 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
12 Hb_001635_170 0.0879467512 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_001404_100 0.0886593625 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
14 Hb_010381_070 0.0897598843 - - PREDICTED: protein STU1-like [Jatropha curcas]
15 Hb_028995_040 0.0905285216 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
16 Hb_000031_060 0.0905449837 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
17 Hb_033153_050 0.0907759103 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
18 Hb_002007_060 0.0930956035 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
19 Hb_002301_140 0.0936528238 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
20 Hb_001377_290 0.0941670416 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005000_210 Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_005000_210--Hb_000139_410 Hb_002188_130 Hb_002188_130 Hb_005000_210--Hb_002188_130 Hb_000866_270 Hb_000866_270 Hb_005000_210--Hb_000866_270 Hb_000367_200 Hb_000367_200 Hb_005000_210--Hb_000367_200 Hb_023226_040 Hb_023226_040 Hb_005000_210--Hb_023226_040 Hb_003078_040 Hb_003078_040 Hb_005000_210--Hb_003078_040 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_001269_680 Hb_001269_680 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_000367_200--Hb_003078_040 Hb_002950_100 Hb_002950_100 Hb_000367_200--Hb_002950_100 Hb_002675_260 Hb_002675_260 Hb_000367_200--Hb_002675_260 Hb_000367_200--Hb_000866_270 Hb_000367_200--Hb_000139_410 Hb_023226_040--Hb_002007_060 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_023226_040--Hb_028995_040 Hb_003078_040--Hb_028995_040 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
212.545 70.3235 71.1866 76.4365 122.256 101.27
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.292 151.876 130.641 68.5619 26.783

CAGE analysis