Hb_005147_100

Information

Type -
Description -
Location Contig5147: 113116-116802
Sequence    

Annotation

kegg
ID rcu:RCOM_0758180
description hypothetical protein
nr
ID XP_002526433.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0758180 PE=4 SV=1
Gene Ontology
ID GO:0016023
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46485: 113258-116162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002188_130 0.0847764075 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
3 Hb_002968_060 0.0920521774 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
4 Hb_000230_200 0.0929946925 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
5 Hb_001269_680 0.099433063 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
6 Hb_000220_130 0.1003760046 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
7 Hb_000141_040 0.1046257738 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
8 Hb_005000_210 0.1058824567 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
9 Hb_000127_130 0.1069728101 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
10 Hb_009773_020 0.1075348168 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
11 Hb_032808_020 0.1095750702 - - PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
12 Hb_002007_060 0.111926407 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
13 Hb_001252_100 0.1175139061 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
14 Hb_010172_080 0.1178171811 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_000139_410 0.1190086122 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
16 Hb_005433_040 0.1191132843 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
17 Hb_000103_560 0.1192086436 - - ADP-ribosylation factor, putative [Ricinus communis]
18 Hb_023226_040 0.1216994407 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
19 Hb_002301_140 0.1222111954 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
20 Hb_112798_030 0.1231008874 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005147_100 Hb_005147_100 Hb_002188_130 Hb_002188_130 Hb_005147_100--Hb_002188_130 Hb_002968_060 Hb_002968_060 Hb_005147_100--Hb_002968_060 Hb_000230_200 Hb_000230_200 Hb_005147_100--Hb_000230_200 Hb_001269_680 Hb_001269_680 Hb_005147_100--Hb_001269_680 Hb_000220_130 Hb_000220_130 Hb_005147_100--Hb_000220_130 Hb_000141_040 Hb_000141_040 Hb_005147_100--Hb_000141_040 Hb_005000_210 Hb_005000_210 Hb_002188_130--Hb_005000_210 Hb_002188_130--Hb_001269_680 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_002188_130--Hb_000141_040 Hb_002968_060--Hb_000230_200 Hb_002007_060 Hb_002007_060 Hb_002968_060--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_002968_060--Hb_003001_120 Hb_002968_060--Hb_001269_680 Hb_010661_030 Hb_010661_030 Hb_002968_060--Hb_010661_030 Hb_000103_560 Hb_000103_560 Hb_002968_060--Hb_000103_560 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_000230_200--Hb_003001_120 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_001269_680--Hb_002007_060 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_000220_130--Hb_000141_040 Hb_030736_080 Hb_030736_080 Hb_000220_130--Hb_030736_080 Hb_145880_030 Hb_145880_030 Hb_000220_130--Hb_145880_030 Hb_000220_130--Hb_007778_030 Hb_033594_110 Hb_033594_110 Hb_000220_130--Hb_033594_110 Hb_000141_040--Hb_145880_030 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.916 15.5544 15.8571 31.0126 27.1919 34.841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0126 52.0381 41.6818 9.97844 12.1788

CAGE analysis