Hb_000347_030

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig347: 52785-53885
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G126400g
description hypothetical protein
nr
ID XP_012068832.1
description PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067L990
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36170: 52653-54289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_030 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
2 Hb_000329_630 0.0950723606 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
3 Hb_001439_100 0.0955747414 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
4 Hb_000958_110 0.0970709689 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
5 Hb_000015_040 0.101485952 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
6 Hb_004837_130 0.1033737544 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
7 Hb_029584_050 0.1045659252 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
8 Hb_000230_270 0.1060447818 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
9 Hb_000656_110 0.1067344028 - - nucleolysin tia-1, putative [Ricinus communis]
10 Hb_002685_110 0.1077021451 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
11 Hb_093084_050 0.1088060979 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
12 Hb_000125_190 0.1131625061 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
13 Hb_017224_030 0.1176304175 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_011883_010 0.1178511852 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
15 Hb_005188_080 0.117964469 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_011671_250 0.1183931515 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000976_410 0.1186172173 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_005914_080 0.1200464971 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
19 Hb_000671_050 0.1202120307 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_000069_600 0.120918536 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_030 Hb_000347_030 Hb_000329_630 Hb_000329_630 Hb_000347_030--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_000347_030--Hb_001439_100 Hb_000958_110 Hb_000958_110 Hb_000347_030--Hb_000958_110 Hb_000015_040 Hb_000015_040 Hb_000347_030--Hb_000015_040 Hb_004837_130 Hb_004837_130 Hb_000347_030--Hb_004837_130 Hb_029584_050 Hb_029584_050 Hb_000347_030--Hb_029584_050 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_000329_630--Hb_001439_100 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460 Hb_001439_100--Hb_005054_290 Hb_001439_100--Hb_029584_050 Hb_001439_100--Hb_000015_040 Hb_001439_100--Hb_000000_460 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_003050_220 Hb_003050_220 Hb_000958_110--Hb_003050_220 Hb_000958_110--Hb_000015_040 Hb_000002_340 Hb_000002_340 Hb_000958_110--Hb_000002_340 Hb_002232_410 Hb_002232_410 Hb_000958_110--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000958_110--Hb_003151_040 Hb_017224_030 Hb_017224_030 Hb_000958_110--Hb_017224_030 Hb_000015_040--Hb_029584_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_000015_040--Hb_003050_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_000999_050 Hb_000999_050 Hb_004837_130--Hb_000999_050 Hb_000252_200 Hb_000252_200 Hb_004837_130--Hb_000252_200 Hb_004607_050 Hb_004607_050 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8452 20.1302 7.42731 25.7403 10.7093 26.9916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.1807 24.5719 27.3375 22.2774 22.0894

CAGE analysis