Hb_001004_150

Information

Type -
Description -
Location Contig1004: 295714-302475
Sequence    

Annotation

kegg
ID tcc:TCM_017372
description Mitochondrial substrate carrier family protein isoform 1
nr
ID XP_012067384.1
description PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
swissprot
ID Q6GQS1
description Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1
trembl
ID A0A067L099
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26894 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-binding mitochondrial carrier protein s -1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00302: 295305-302468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_150 0.0 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
2 Hb_001153_120 0.1272001209 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
3 Hb_000331_460 0.1542149078 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
4 Hb_000310_100 0.1674090274 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001454_100 0.1730800898 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
6 Hb_012244_010 0.17357924 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
7 Hb_000377_150 0.1770964429 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
8 Hb_001059_150 0.1778373314 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
9 Hb_000107_510 0.1784777678 - - phosphate transporter [Manihot esculenta]
10 Hb_009111_020 0.1792534565 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
11 Hb_011861_100 0.1797642522 - - amino acid transporter, putative [Ricinus communis]
12 Hb_003589_080 0.1824968879 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
13 Hb_007110_010 0.1834934359 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
14 Hb_004225_080 0.1867523885 - - -
15 Hb_000258_330 0.1880137443 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_000708_040 0.1895577369 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002284_310 0.1905339782 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
18 Hb_106552_040 0.1906825173 - - conserved hypothetical protein [Ricinus communis]
19 Hb_016564_010 0.1908403971 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
20 Hb_001059_160 0.1919682983 - - hexose transporter 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001004_150 Hb_001004_150 Hb_001153_120 Hb_001153_120 Hb_001004_150--Hb_001153_120 Hb_000331_460 Hb_000331_460 Hb_001004_150--Hb_000331_460 Hb_000310_100 Hb_000310_100 Hb_001004_150--Hb_000310_100 Hb_001454_100 Hb_001454_100 Hb_001004_150--Hb_001454_100 Hb_012244_010 Hb_012244_010 Hb_001004_150--Hb_012244_010 Hb_000377_150 Hb_000377_150 Hb_001004_150--Hb_000377_150 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_002284_310 Hb_002284_310 Hb_000331_460--Hb_002284_310 Hb_000032_440 Hb_000032_440 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000603_230 Hb_000603_230 Hb_000331_460--Hb_000603_230 Hb_004225_080 Hb_004225_080 Hb_000331_460--Hb_004225_080 Hb_000310_100--Hb_011861_100 Hb_025466_010 Hb_025466_010 Hb_000310_100--Hb_025466_010 Hb_000310_100--Hb_001153_120 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_000210_100 Hb_000210_100 Hb_001454_100--Hb_000210_100 Hb_025466_020 Hb_025466_020 Hb_001454_100--Hb_025466_020 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_000260_280 Hb_000260_280 Hb_001454_100--Hb_000260_280 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_000457_290 Hb_000457_290 Hb_000377_150--Hb_000457_290 Hb_002503_020 Hb_002503_020 Hb_000377_150--Hb_002503_020 Hb_000377_150--Hb_000428_060 Hb_000615_050 Hb_000615_050 Hb_000377_150--Hb_000615_050 Hb_161175_010 Hb_161175_010 Hb_000377_150--Hb_161175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80486 0.525479 2.34286 3.97166 0.105046 0.410632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94791 2.30044 5.11068 0.673584 2.80726

CAGE analysis