Hb_106552_040

Information

Type -
Description -
Location Contig106552: 9942-10571
Sequence    

Annotation

kegg
ID rcu:RCOM_0820290
description hypothetical protein
nr
ID XP_002525219.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0820290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02046: 8069-9307 , PASA_asmbl_02047: 8612-9254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106552_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000310_100 0.1439891234 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006903_030 0.1777425579 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
4 Hb_025466_010 0.1778644875 - - unnamed protein product [Vitis vinifera]
5 Hb_012244_010 0.1802054764 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
6 Hb_121881_010 0.1843169231 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
7 Hb_007441_080 0.1849491219 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
8 Hb_011861_100 0.1859245574 - - amino acid transporter, putative [Ricinus communis]
9 Hb_001153_120 0.1887343847 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
10 Hb_031527_110 0.1893251547 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
11 Hb_001004_150 0.1906825173 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
12 Hb_000244_170 0.1930840416 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
13 Hb_004088_040 0.1943223818 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
14 Hb_000525_050 0.1943654578 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004429_080 0.195021064 - - RNA binding protein, putative [Ricinus communis]
16 Hb_002174_040 0.1964428484 - - DNAJ heat shock family protein [Theobroma cacao]
17 Hb_000742_020 0.1965426679 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_002184_090 0.1986518448 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000465_320 0.1995667451 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
20 Hb_005470_030 0.2050735406 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_106552_040 Hb_106552_040 Hb_000310_100 Hb_000310_100 Hb_106552_040--Hb_000310_100 Hb_006903_030 Hb_006903_030 Hb_106552_040--Hb_006903_030 Hb_025466_010 Hb_025466_010 Hb_106552_040--Hb_025466_010 Hb_012244_010 Hb_012244_010 Hb_106552_040--Hb_012244_010 Hb_121881_010 Hb_121881_010 Hb_106552_040--Hb_121881_010 Hb_007441_080 Hb_007441_080 Hb_106552_040--Hb_007441_080 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_000310_100--Hb_012244_010 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_025466_020 Hb_025466_020 Hb_006903_030--Hb_025466_020 Hb_006903_030--Hb_025466_010 Hb_048476_060 Hb_048476_060 Hb_006903_030--Hb_048476_060 Hb_026889_040 Hb_026889_040 Hb_006903_030--Hb_026889_040 Hb_000110_050 Hb_000110_050 Hb_006903_030--Hb_000110_050 Hb_000244_170 Hb_000244_170 Hb_006903_030--Hb_000244_170 Hb_025466_010--Hb_025466_020 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_025466_010--Hb_001153_120 Hb_025466_010--Hb_012244_010 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_012244_010--Hb_001153_120 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_001633_200 Hb_001633_200 Hb_121881_010--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_121881_010--Hb_000742_020 Hb_000057_110 Hb_000057_110 Hb_121881_010--Hb_000057_110 Hb_006829_060 Hb_006829_060 Hb_121881_010--Hb_006829_060 Hb_000684_030 Hb_000684_030 Hb_121881_010--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_121881_010--Hb_000200_300 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_007441_080--Hb_000742_020 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.081108 0.0413837 0.284974 0.413726 0 0.115302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187966 0.0738696 0.390278 0.12084 0.288065

CAGE analysis