Hb_003875_030

Information

Type -
Description -
Location Contig3875: 14230-20889
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05970g
description hypothetical protein
nr
ID XP_012080634.1
description PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
swissprot
ID Q0WVE9
description Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2
trembl
ID A0A067K3L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13744 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable plastidic glucose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38879: 53-20776 , PASA_asmbl_38880: 53-20776 , PASA_asmbl_38881: 53-20954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003875_030 0.0 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
2 Hb_001663_040 0.0840133502 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
3 Hb_171718_010 0.0855272203 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
4 Hb_001946_380 0.0869145393 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
5 Hb_000585_110 0.0895473675 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
6 Hb_055690_010 0.0937517571 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
7 Hb_008375_010 0.0949810082 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
8 Hb_042083_040 0.0984277621 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004644_030 0.098577761 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_007441_310 0.0998160089 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_000270_480 0.0999006375 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
12 Hb_002762_110 0.1000545143 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011606_020 0.1036138427 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
14 Hb_000167_110 0.1040847028 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_008705_020 0.1040874652 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_000638_070 0.1044709543 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
17 Hb_001789_200 0.1045237328 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
18 Hb_000086_080 0.1048137328 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012573_050 0.1051583204 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
20 Hb_121089_040 0.1058078766 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]

Gene co-expression network

sample Hb_003875_030 Hb_003875_030 Hb_001663_040 Hb_001663_040 Hb_003875_030--Hb_001663_040 Hb_171718_010 Hb_171718_010 Hb_003875_030--Hb_171718_010 Hb_001946_380 Hb_001946_380 Hb_003875_030--Hb_001946_380 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010 Hb_000181_350 Hb_000181_350 Hb_001663_040--Hb_000181_350 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_012573_050 Hb_012573_050 Hb_001663_040--Hb_012573_050 Hb_000116_130 Hb_000116_130 Hb_001663_040--Hb_000116_130 Hb_000035_350 Hb_000035_350 Hb_171718_010--Hb_000035_350 Hb_000358_020 Hb_000358_020 Hb_171718_010--Hb_000358_020 Hb_002762_110 Hb_002762_110 Hb_171718_010--Hb_002762_110 Hb_171718_010--Hb_001946_380 Hb_005218_080 Hb_005218_080 Hb_171718_010--Hb_005218_080 Hb_121089_040 Hb_121089_040 Hb_001946_380--Hb_121089_040 Hb_000622_290 Hb_000622_290 Hb_001946_380--Hb_000622_290 Hb_001946_380--Hb_002762_110 Hb_000107_430 Hb_000107_430 Hb_001946_380--Hb_000107_430 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_008375_010--Hb_007441_310 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47819 3.57917 10.4508 12.2152 2.10153 3.71451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62332 5.58847 6.65711 5.49854 14.9776

CAGE analysis