Hb_121089_040

Information

Type -
Description -
Location Contig121089: 43399-47518
Sequence    

Annotation

kegg
ID rcu:RCOM_1692270
description triacylglycerol lipase, putative
nr
ID XP_012086704.1
description PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
swissprot
ID Q680C0
description GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
trembl
ID A0A067JMT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20442 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gdsl esterase lipase at4g10955

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06494: 36103-42739 , PASA_asmbl_06497: 44931-47808 , PASA_asmbl_06498: 43357-47808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121089_040 0.0 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
2 Hb_001946_380 0.0783671597 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
3 Hb_001976_030 0.0948329214 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
4 Hb_001628_120 0.0950729406 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
5 Hb_000816_200 0.1014493518 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
6 Hb_001195_770 0.1045170902 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
7 Hb_003875_030 0.1058078766 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
8 Hb_042083_040 0.1065493177 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001277_100 0.1071669535 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
10 Hb_000049_180 0.1072879986 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
11 Hb_007441_310 0.1088869785 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
12 Hb_001663_040 0.1096547486 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
13 Hb_000789_120 0.1104189222 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
14 Hb_000116_130 0.1146926437 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
15 Hb_005725_220 0.1163988062 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
16 Hb_002053_010 0.1174858297 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
17 Hb_001789_200 0.1187002912 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
18 Hb_000107_430 0.1229860281 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
19 Hb_008705_020 0.1236589726 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
20 Hb_000114_150 0.1239761609 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_121089_040 Hb_121089_040 Hb_001946_380 Hb_001946_380 Hb_121089_040--Hb_001946_380 Hb_001976_030 Hb_001976_030 Hb_121089_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_121089_040--Hb_001628_120 Hb_000816_200 Hb_000816_200 Hb_121089_040--Hb_000816_200 Hb_001195_770 Hb_001195_770 Hb_121089_040--Hb_001195_770 Hb_003875_030 Hb_003875_030 Hb_121089_040--Hb_003875_030 Hb_000622_290 Hb_000622_290 Hb_001946_380--Hb_000622_290 Hb_002762_110 Hb_002762_110 Hb_001946_380--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_001946_380--Hb_171718_010 Hb_000107_430 Hb_000107_430 Hb_001946_380--Hb_000107_430 Hb_001946_380--Hb_003875_030 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_001628_120--Hb_042083_040 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_000816_200--Hb_007441_310 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_001195_770--Hb_002762_110 Hb_001663_040 Hb_001663_040 Hb_003875_030--Hb_001663_040 Hb_003875_030--Hb_171718_010 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27458 2.14824 10.7771 12.0943 3.70069 2.56655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09324 5.81785 6.94161 4.12023 20.8689

CAGE analysis