Hb_042083_040

Information

Type -
Description -
Location Contig42083: 35243-40381
Sequence    

Annotation

kegg
ID rcu:RCOM_1250170
description hypothetical protein
nr
ID XP_002522235.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L4E7
description SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1
trembl
ID B9S8B6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41577: 35275-39823 , PASA_asmbl_41578: 38542-38853
cDNA
(Sanger)
(ID:Location)		 011_L12.ab1: 35283-39399 , 051_I06.ab1: 35275-39375

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_174865_040 0.0802423611 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
3 Hb_001976_030 0.0842885639 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
4 Hb_001628_120 0.0871008195 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
5 Hb_156850_100 0.0903397817 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
6 Hb_000049_180 0.0936290059 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
7 Hb_000096_190 0.0946352894 - - unknown [Lotus japonicus]
8 Hb_002759_120 0.0969749846 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003875_030 0.0984277621 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
10 Hb_007441_310 0.0994742238 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_002053_010 0.1031511387 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_003994_080 0.1048233661 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
13 Hb_000397_150 0.1048407338 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
14 Hb_000638_070 0.106225037 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
15 Hb_121089_040 0.1065493177 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
16 Hb_000962_070 0.1066626594 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_160271_010 0.1075544246 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
18 Hb_000086_080 0.1087245046 - - conserved hypothetical protein [Ricinus communis]
19 Hb_048093_010 0.1088078934 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
20 Hb_001675_140 0.108980293 - - hypothetical protein L484_026216 [Morus notabilis]

Gene co-expression network

sample Hb_042083_040 Hb_042083_040 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_001976_030 Hb_001976_030 Hb_042083_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_042083_040--Hb_001628_120 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_000049_180 Hb_000049_180 Hb_042083_040--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_042083_040--Hb_000096_190 Hb_174865_040--Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_000388_150 Hb_000388_150 Hb_174865_040--Hb_000388_150 Hb_001976_030--Hb_000049_180 Hb_001976_030--Hb_001628_120 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_000049_180--Hb_007441_310 Hb_000049_180--Hb_000096_190 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_000049_160 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9795 4.06132 16.0979 16.7863 2.96484 5.22856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41724 6.40831 5.46079 3.78655 21.1577

CAGE analysis