Hb_001976_030

Information

Type -
Description -
Location Contig1976: 16413-21458
Sequence    

Annotation

kegg
ID rcu:RCOM_0270700
description Myosin-1, putative
nr
ID XP_012081669.1
description PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
swissprot
ID F4IJK1
description Protein NETWORKED 2D OS=Arabidopsis thaliana GN=NET2D PE=3 SV=1
trembl
ID B9T6U1
description Myosin-1, putative OS=Ricinus communis GN=RCOM_0270700 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat-containing protein ddb_g0290503

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19850: 16075-19080 , PASA_asmbl_19852: 20613-21434
cDNA
(Sanger)
(ID:Location)		 022_F01.ab1: 16085-17860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_030 0.0 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
2 Hb_000049_180 0.0477540273 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
3 Hb_001628_120 0.0792784707 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
4 Hb_042083_040 0.0842885639 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006829_060 0.0877609761 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
6 Hb_005563_010 0.0908330588 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
7 Hb_000638_070 0.0921320035 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
8 Hb_121089_040 0.0948329214 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
9 Hb_004306_110 0.0985459197 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_007441_310 0.099031011 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_000920_310 0.1051102185 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_000096_190 0.1067478451 - - unknown [Lotus japonicus]
13 Hb_000049_160 0.1081802319 - - tyrosine decarboxylase family protein [Populus trichocarpa]
14 Hb_000684_390 0.1093094141 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
15 Hb_000139_300 0.1100604118 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
16 Hb_000057_110 0.1106552894 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_000390_190 0.1121217311 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000397_150 0.1135875683 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
19 Hb_156850_100 0.1151024105 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
20 Hb_000585_110 0.1167755139 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]

Gene co-expression network

sample Hb_001976_030 Hb_001976_030 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001628_120 Hb_001628_120 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000049_180--Hb_001628_120 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000096_190 Hb_000096_190 Hb_000049_180--Hb_000096_190 Hb_000049_180--Hb_042083_040 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_001628_120--Hb_042083_040 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_042083_040--Hb_000096_190 Hb_000012_080 Hb_000012_080 Hb_006829_060--Hb_000012_080 Hb_000979_130 Hb_000979_130 Hb_006829_060--Hb_000979_130 Hb_000057_110 Hb_000057_110 Hb_006829_060--Hb_000057_110 Hb_002687_160 Hb_002687_160 Hb_006829_060--Hb_002687_160 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_005563_010--Hb_000049_180 Hb_000086_210 Hb_000086_210 Hb_005563_010--Hb_000086_210 Hb_001369_100 Hb_001369_100 Hb_005563_010--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_005563_010--Hb_000139_300 Hb_005563_010--Hb_001628_120 Hb_000665_180 Hb_000665_180 Hb_000638_070--Hb_000665_180 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14924 0.674449 4.01845 5.10713 0.902133 0.845262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37327 1.31899 1.65072 1.37175 5.72612

CAGE analysis