Hb_025466_010

Information

Type -
Description -
Location Contig25466: 8697-9998
Sequence    

Annotation

kegg
ID cic:CICLE_v10011719mg
description hypothetical protein
nr
ID CBI32808.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q43697
description Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1
trembl
ID W5A3T9
description Uncharacterized protein OS=Triticum aestivum PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-5 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26586: 8603-12085
cDNA
(Sanger)
(ID:Location)		 002_P09.ab1: 8699-11040 , 004_E15.ab1: 8699-11041 , 004_H08.ab1: 8699-11070 , 011_A04.ab1: 8699-11052 , 013_E10.ab1: 8703-9670 , 015_L17.ab1: 8699-9584 , 015_M04.ab1: 8699-9718 , 027_N21.ab1: 8699-9669 , 037_L15.ab1: 8699-11059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025466_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_025466_020 0.088528257 - - tubulin beta-6 [Brassica oleracea var. italica]
3 Hb_000310_100 0.124238719 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000243_350 0.1288333334 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
5 Hb_001153_120 0.1399878214 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
6 Hb_006903_030 0.1429182297 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
7 Hb_012244_010 0.143213711 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
8 Hb_003994_030 0.1446232678 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
9 Hb_021409_080 0.1446464492 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
10 Hb_000240_030 0.1465839872 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011861_100 0.1477132697 - - amino acid transporter, putative [Ricinus communis]
12 Hb_002110_100 0.1490810703 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_021943_090 0.1521133288 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
14 Hb_027073_010 0.1543385548 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
15 Hb_011139_040 0.1550200896 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
16 Hb_007441_080 0.1567717203 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
17 Hb_003207_020 0.1570137557 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
18 Hb_000590_120 0.1574487868 - - dehydroascorbate reductase, putative [Ricinus communis]
19 Hb_002631_010 0.162484164 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
20 Hb_011606_020 0.1631241516 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]

Gene co-expression network

sample Hb_025466_010 Hb_025466_010 Hb_025466_020 Hb_025466_020 Hb_025466_010--Hb_025466_020 Hb_000310_100 Hb_000310_100 Hb_025466_010--Hb_000310_100 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_001153_120 Hb_001153_120 Hb_025466_010--Hb_001153_120 Hb_006903_030 Hb_006903_030 Hb_025466_010--Hb_006903_030 Hb_012244_010 Hb_012244_010 Hb_025466_010--Hb_012244_010 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_001454_100 Hb_001454_100 Hb_025466_020--Hb_001454_100 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_000310_100--Hb_001153_120 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_003305_040 Hb_003305_040 Hb_000243_350--Hb_003305_040 Hb_002110_100 Hb_002110_100 Hb_000243_350--Hb_002110_100 Hb_005701_120 Hb_005701_120 Hb_000243_350--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_000243_350--Hb_000197_020 Hb_000252_100 Hb_000252_100 Hb_000243_350--Hb_000252_100 Hb_011606_020 Hb_011606_020 Hb_000243_350--Hb_011606_020 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_001153_120--Hb_011861_100 Hb_006903_030--Hb_048476_060 Hb_026889_040 Hb_026889_040 Hb_006903_030--Hb_026889_040 Hb_000110_050 Hb_000110_050 Hb_006903_030--Hb_000110_050 Hb_000244_170 Hb_000244_170 Hb_006903_030--Hb_000244_170 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1461 37.4509 121.966 341.042 35.2907 32.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
173.967 64.088 210.221 120.503 195.777

CAGE analysis