Hb_016564_010

Information

Type -
Description -
Location Contig16564: 3795-4780
Sequence    

Annotation

kegg
ID csv:101226608
description uncharacterized LOC101226608
nr
ID XP_004971673.1
description PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
swissprot
ID -
description -
trembl
ID I1HB38
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI2G00470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15253: 3775-4908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016564_010 0.0 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
2 Hb_001454_100 0.1562460618 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
3 Hb_001153_120 0.1822235697 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_000389_050 0.1868542714 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
5 Hb_001004_150 0.1908403971 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
6 Hb_025466_010 0.1924534195 - - unnamed protein product [Vitis vinifera]
7 Hb_003097_060 0.1953508096 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
8 Hb_000465_320 0.1955849668 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
9 Hb_000310_100 0.1957241513 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000210_100 0.1964969742 - - pepsin A, putative [Ricinus communis]
11 Hb_001377_420 0.2010803088 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001481_130 0.2018805558 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011861_100 0.2040286066 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000107_510 0.2061386182 - - phosphate transporter [Manihot esculenta]
15 Hb_002007_340 0.20702986 - - cyclin-dependent protein kinase, putative [Ricinus communis]
16 Hb_012163_020 0.2083387794 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
17 Hb_000477_040 0.2142569777 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002320_080 0.2144986025 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
19 Hb_025466_020 0.2159659258 - - tubulin beta-6 [Brassica oleracea var. italica]
20 Hb_075247_010 0.2189761668 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_016564_010 Hb_016564_010 Hb_001454_100 Hb_001454_100 Hb_016564_010--Hb_001454_100 Hb_001153_120 Hb_001153_120 Hb_016564_010--Hb_001153_120 Hb_000389_050 Hb_000389_050 Hb_016564_010--Hb_000389_050 Hb_001004_150 Hb_001004_150 Hb_016564_010--Hb_001004_150 Hb_025466_010 Hb_025466_010 Hb_016564_010--Hb_025466_010 Hb_003097_060 Hb_003097_060 Hb_016564_010--Hb_003097_060 Hb_000210_100 Hb_000210_100 Hb_001454_100--Hb_000210_100 Hb_025466_020 Hb_025466_020 Hb_001454_100--Hb_025466_020 Hb_000310_100 Hb_000310_100 Hb_001454_100--Hb_000310_100 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_000260_280 Hb_000260_280 Hb_001454_100--Hb_000260_280 Hb_012244_010 Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_001004_150--Hb_001153_120 Hb_000331_460 Hb_000331_460 Hb_001004_150--Hb_000331_460 Hb_001004_150--Hb_000310_100 Hb_001004_150--Hb_001454_100 Hb_001004_150--Hb_012244_010 Hb_001004_150--Hb_000377_150 Hb_025466_010--Hb_025466_020 Hb_025466_010--Hb_000310_100 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_025466_010--Hb_001153_120 Hb_006903_030 Hb_006903_030 Hb_025466_010--Hb_006903_030 Hb_025466_010--Hb_012244_010 Hb_011671_460 Hb_011671_460 Hb_003097_060--Hb_011671_460 Hb_012163_020 Hb_012163_020 Hb_003097_060--Hb_012163_020 Hb_000096_150 Hb_000096_150 Hb_003097_060--Hb_000096_150 Hb_000056_250 Hb_000056_250 Hb_003097_060--Hb_000056_250 Hb_027751_060 Hb_027751_060 Hb_003097_060--Hb_027751_060 Hb_007943_190 Hb_007943_190 Hb_003097_060--Hb_007943_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62832 3.46172 10.3409 46.012 6.51913 1.05402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4381 16.8852 56.0186 6.73968 27.9574

CAGE analysis