Hb_020301_030

Information

Type -
Description -
Location Contig20301: 29056-32344
Sequence    

Annotation

kegg
ID rcu:RCOM_0705990
description calmodulin binding protein, putative
nr
ID XP_002516086.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR7
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0705990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020301_030 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000389_050 0.2023407589 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
3 Hb_075807_010 0.2119593952 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]
4 Hb_009615_120 0.2245603564 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
5 Hb_002609_040 0.2253901343 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
6 Hb_001946_330 0.2411111572 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
7 Hb_036988_010 0.2430606283 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
8 Hb_002078_440 0.2446681879 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
9 Hb_001493_180 0.244785925 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
10 Hb_005542_060 0.2454155599 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001357_010 0.2469486302 - - -
12 Hb_000329_290 0.2491225143 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
13 Hb_007741_100 0.2492605218 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
14 Hb_001817_020 0.2509277256 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
15 Hb_000748_130 0.2513376598 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
16 Hb_001097_090 0.251775048 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
17 Hb_092107_010 0.2528790355 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001377_420 0.2533252277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002307_170 0.2547213558 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000260_210 0.2555491498 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020301_030 Hb_020301_030 Hb_000389_050 Hb_000389_050 Hb_020301_030--Hb_000389_050 Hb_075807_010 Hb_075807_010 Hb_020301_030--Hb_075807_010 Hb_009615_120 Hb_009615_120 Hb_020301_030--Hb_009615_120 Hb_002609_040 Hb_002609_040 Hb_020301_030--Hb_002609_040 Hb_001946_330 Hb_001946_330 Hb_020301_030--Hb_001946_330 Hb_036988_010 Hb_036988_010 Hb_020301_030--Hb_036988_010 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_000365_370 Hb_000365_370 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_001387_030 Hb_001387_030 Hb_075807_010--Hb_001387_030 Hb_025557_030 Hb_025557_030 Hb_075807_010--Hb_025557_030 Hb_027393_030 Hb_027393_030 Hb_075807_010--Hb_027393_030 Hb_002007_190 Hb_002007_190 Hb_075807_010--Hb_002007_190 Hb_001189_050 Hb_001189_050 Hb_075807_010--Hb_001189_050 Hb_000329_290 Hb_000329_290 Hb_009615_120--Hb_000329_290 Hb_000656_310 Hb_000656_310 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009778_060 Hb_009778_060 Hb_009615_120--Hb_009778_060 Hb_001097_090 Hb_001097_090 Hb_002609_040--Hb_001097_090 Hb_000436_030 Hb_000436_030 Hb_002609_040--Hb_000436_030 Hb_019113_020 Hb_019113_020 Hb_002609_040--Hb_019113_020 Hb_000320_330 Hb_000320_330 Hb_002609_040--Hb_000320_330 Hb_010402_050 Hb_010402_050 Hb_002609_040--Hb_010402_050 Hb_011021_040 Hb_011021_040 Hb_002609_040--Hb_011021_040 Hb_000059_050 Hb_000059_050 Hb_001946_330--Hb_000059_050 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_003992_170 Hb_003992_170 Hb_001946_330--Hb_003992_170 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_000684_440 Hb_000684_440 Hb_036988_010--Hb_000684_440 Hb_001294_010 Hb_001294_010 Hb_036988_010--Hb_001294_010 Hb_000786_030 Hb_000786_030 Hb_036988_010--Hb_000786_030 Hb_002422_070 Hb_002422_070 Hb_036988_010--Hb_002422_070 Hb_000479_140 Hb_000479_140 Hb_036988_010--Hb_000479_140 Hb_002307_170 Hb_002307_170 Hb_036988_010--Hb_002307_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.236273 0.791595 0.153813 1.17012 0.0135594 0.654113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.986458 1.16412 3.41887 0.164545 1.87816

CAGE analysis