Hb_001387_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig1387: 48436-49860
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13920g
description POPTRDRAFT_663502; hypothetical protein
nr
ID XP_002319909.2
description hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
swissprot
ID Q9SKT1
description Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1
trembl
ID B9I5K4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13920g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf054-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001387_030 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
2 Hb_005408_050 0.1642038431 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
3 Hb_075807_010 0.2001803592 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]
4 Hb_055101_010 0.2202833876 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_004200_020 0.2506452471 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_000990_060 0.2530192298 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
7 Hb_115791_020 0.2640003591 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_005048_020 0.2647202758 - - Retrotransposon protein, putative [Theobroma cacao]
9 Hb_026048_020 0.2773269942 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
10 Hb_004846_160 0.280294338 - - -
11 Hb_002918_180 0.2812674345 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
12 Hb_002110_020 0.2829926131 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
13 Hb_006573_180 0.2877471021 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
14 Hb_000239_020 0.2898369869 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
15 Hb_022250_090 0.2927689165 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
16 Hb_000077_060 0.2947186324 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
17 Hb_002045_180 0.2952632142 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
18 Hb_000226_080 0.2968499086 - - prephenate dehydrogenase, putative [Ricinus communis]
19 Hb_000258_380 0.3022238866 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
20 Hb_006153_080 0.3034549837 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001387_030 Hb_001387_030 Hb_005408_050 Hb_005408_050 Hb_001387_030--Hb_005408_050 Hb_075807_010 Hb_075807_010 Hb_001387_030--Hb_075807_010 Hb_055101_010 Hb_055101_010 Hb_001387_030--Hb_055101_010 Hb_004200_020 Hb_004200_020 Hb_001387_030--Hb_004200_020 Hb_000990_060 Hb_000990_060 Hb_001387_030--Hb_000990_060 Hb_115791_020 Hb_115791_020 Hb_001387_030--Hb_115791_020 Hb_004846_160 Hb_004846_160 Hb_005408_050--Hb_004846_160 Hb_005408_050--Hb_055101_010 Hb_000077_060 Hb_000077_060 Hb_005408_050--Hb_000077_060 Hb_000226_080 Hb_000226_080 Hb_005408_050--Hb_000226_080 Hb_005408_050--Hb_075807_010 Hb_020301_030 Hb_020301_030 Hb_075807_010--Hb_020301_030 Hb_025557_030 Hb_025557_030 Hb_075807_010--Hb_025557_030 Hb_027393_030 Hb_027393_030 Hb_075807_010--Hb_027393_030 Hb_002007_190 Hb_002007_190 Hb_075807_010--Hb_002007_190 Hb_001189_050 Hb_001189_050 Hb_075807_010--Hb_001189_050 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_022250_090 Hb_022250_090 Hb_004200_020--Hb_022250_090 Hb_000213_100 Hb_000213_100 Hb_004200_020--Hb_000213_100 Hb_002918_180 Hb_002918_180 Hb_004200_020--Hb_002918_180 Hb_002577_010 Hb_002577_010 Hb_004200_020--Hb_002577_010 Hb_002218_010 Hb_002218_010 Hb_004200_020--Hb_002218_010 Hb_000680_050 Hb_000680_050 Hb_004200_020--Hb_000680_050 Hb_024468_020 Hb_024468_020 Hb_000990_060--Hb_024468_020 Hb_000016_190 Hb_000016_190 Hb_000990_060--Hb_000016_190 Hb_003777_050 Hb_003777_050 Hb_000990_060--Hb_003777_050 Hb_000239_020 Hb_000239_020 Hb_000990_060--Hb_000239_020 Hb_000990_060--Hb_004785_140 Hb_115791_020--Hb_075807_010 Hb_005048_020 Hb_005048_020 Hb_115791_020--Hb_005048_020 Hb_004734_010 Hb_004734_010 Hb_115791_020--Hb_004734_010 Hb_115791_020--Hb_002918_180 Hb_115791_020--Hb_055101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07475 2.30709 0.0553236 0.460638 0 0.116733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.795275 0.54744 4.35016 0.583135 0.925073

CAGE analysis