Hb_002918_180

Information

Type -
Description -
Location Contig2918: 184114-186727
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04740g
description POPTRDRAFT_758865; hypothetical protein
nr
ID XP_002305120.2
description hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
swissprot
ID Q9SMZ2
description Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
trembl
ID B9H2R5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04740g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_180 0.0 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
2 Hb_002235_040 0.1004179674 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
3 Hb_002316_150 0.1112983432 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
4 Hb_000866_120 0.1210324128 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
5 Hb_029142_050 0.1218448043 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_001999_090 0.1223277906 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
7 Hb_022250_090 0.12459759 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
8 Hb_004200_020 0.1249613784 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
9 Hb_080952_010 0.126100639 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
10 Hb_006718_020 0.1288685314 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
11 Hb_000172_110 0.1300305136 - - -
12 Hb_002007_160 0.1303574265 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
13 Hb_000213_100 0.1308661465 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
14 Hb_004690_040 0.1313562992 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
15 Hb_005188_020 0.1330404047 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
16 Hb_007441_220 0.1351723889 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
17 Hb_000270_670 0.1375358963 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
18 Hb_003020_050 0.1380923746 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000392_150 0.1413958236 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
20 Hb_002316_160 0.1415393576 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_180 Hb_002918_180 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002316_150 Hb_002316_150 Hb_002918_180--Hb_002316_150 Hb_000866_120 Hb_000866_120 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_001999_090 Hb_001999_090 Hb_002918_180--Hb_001999_090 Hb_022250_090 Hb_022250_090 Hb_002918_180--Hb_022250_090 Hb_002235_040--Hb_001999_090 Hb_007441_220 Hb_007441_220 Hb_002235_040--Hb_007441_220 Hb_002235_040--Hb_002316_150 Hb_000417_200 Hb_000417_200 Hb_002235_040--Hb_000417_200 Hb_002316_160 Hb_002316_160 Hb_002235_040--Hb_002316_160 Hb_012725_060 Hb_012725_060 Hb_002235_040--Hb_012725_060 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_002316_150--Hb_007441_220 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_002007_160 Hb_002007_160 Hb_000866_120--Hb_002007_160 Hb_000866_120--Hb_000172_110 Hb_000866_120--Hb_000270_670 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_029142_050--Hb_002007_160 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_000392_150 Hb_000392_150 Hb_029142_050--Hb_000392_150 Hb_029142_050--Hb_000866_120 Hb_000046_580 Hb_000046_580 Hb_029142_050--Hb_000046_580 Hb_000003_550 Hb_000003_550 Hb_029142_050--Hb_000003_550 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_001999_090--Hb_006718_020 Hb_001999_090--Hb_007441_220 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_000213_100 Hb_000213_100 Hb_022250_090--Hb_000213_100 Hb_000206_240 Hb_000206_240 Hb_022250_090--Hb_000206_240 Hb_002276_130 Hb_002276_130 Hb_022250_090--Hb_002276_130 Hb_002218_010 Hb_002218_010 Hb_022250_090--Hb_002218_010 Hb_000230_390 Hb_000230_390 Hb_022250_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_022250_090--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204806 0.427094 0.0616514 0.0827935 0.129172 0.121236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115665 0.218418 0.482927 0.231773 0.269086

CAGE analysis