Hb_022250_090

Information

Type -
Description -
Location Contig22250: 61214-62809
Sequence    

Annotation

kegg
ID vvi:100254316
description pentatricopeptide repeat-containing protein At1g08070-like
nr
ID XP_012090548.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
swissprot
ID Q9C866
description Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
trembl
ID A0A067JSJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26345 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
2 Hb_000213_100 0.0603476412 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
3 Hb_000206_240 0.1023733403 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002276_130 0.1042362771 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
5 Hb_002218_010 0.1043580203 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
6 Hb_000230_390 0.1061934221 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
7 Hb_003371_090 0.1078205453 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
8 Hb_007508_090 0.1086897532 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
9 Hb_168697_010 0.1136822748 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
10 Hb_004200_020 0.1141364795 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_000866_120 0.1159668796 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
12 Hb_000680_050 0.1167256614 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
13 Hb_007532_030 0.118238927 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
14 Hb_000107_420 0.1215188405 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
15 Hb_000172_110 0.1219003664 - - -
16 Hb_048219_010 0.1238241807 - - coronatine-insensitive 1 [Hevea brasiliensis]
17 Hb_000270_670 0.1241549665 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
18 Hb_002918_180 0.12459759 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
19 Hb_010874_020 0.1250491664 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
20 Hb_001141_390 0.1257014218 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_090 Hb_022250_090 Hb_000213_100 Hb_000213_100 Hb_022250_090--Hb_000213_100 Hb_000206_240 Hb_000206_240 Hb_022250_090--Hb_000206_240 Hb_002276_130 Hb_002276_130 Hb_022250_090--Hb_002276_130 Hb_002218_010 Hb_002218_010 Hb_022250_090--Hb_002218_010 Hb_000230_390 Hb_000230_390 Hb_022250_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_022250_090--Hb_003371_090 Hb_000213_100--Hb_003371_090 Hb_000213_100--Hb_002218_010 Hb_000213_100--Hb_000206_240 Hb_007532_030 Hb_007532_030 Hb_000213_100--Hb_007532_030 Hb_007508_090 Hb_007508_090 Hb_000213_100--Hb_007508_090 Hb_004052_090 Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100 Hb_000866_170 Hb_000866_170 Hb_002276_130--Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_002276_130--Hb_000245_040 Hb_006938_080 Hb_006938_080 Hb_002276_130--Hb_006938_080 Hb_002276_130--Hb_000107_420 Hb_010874_020 Hb_010874_020 Hb_002276_130--Hb_010874_020 Hb_002276_130--Hb_000206_240 Hb_002218_010--Hb_007532_030 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130 Hb_002218_010--Hb_004052_090 Hb_000230_390--Hb_007508_090 Hb_000840_250 Hb_000840_250 Hb_000230_390--Hb_000840_250 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_000230_390--Hb_007532_030 Hb_001014_030 Hb_001014_030 Hb_000230_390--Hb_001014_030 Hb_000230_390--Hb_003371_090 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_003371_090--Hb_007508_090 Hb_002450_020 Hb_002450_020 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_000297_010 Hb_000297_010 Hb_003371_090--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.693749 1.3711 0.138203 0.449726 0.456831 0.520642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.756235 0.755153 1.50821 0.657121 0.479931

CAGE analysis