Hb_004734_010

Information

Type -
Description -
Location Contig4734: 26-2091
Sequence    

Annotation

kegg
ID rcu:RCOM_1078440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085764.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
swissprot
ID Q9CAM8
description Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
trembl
ID A0A067L248
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24325 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44435: 509-734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004734_010 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
2 Hb_000300_150 0.1657818618 - - Peroxidase 44 precursor, putative [Ricinus communis]
3 Hb_000189_140 0.1975170265 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_003656_060 0.2155577849 - - monooxygenase, putative [Ricinus communis]
5 Hb_001373_180 0.225381715 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
6 Hb_001473_040 0.2275677818 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_001511_070 0.2310829482 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
8 Hb_027654_060 0.2343880669 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
9 Hb_013607_040 0.2373325902 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
10 Hb_082609_010 0.2387449802 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
11 Hb_005188_020 0.2401814178 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
12 Hb_002704_070 0.2410118769 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
13 Hb_000352_270 0.2416956635 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
14 Hb_003020_220 0.2444655044 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
15 Hb_000116_430 0.2457694433 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_001322_050 0.2463155952 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
17 Hb_032699_010 0.2488438269 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_011484_010 0.2512043245 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000366_090 0.2515274606 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
20 Hb_011310_080 0.2519041858 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]

Gene co-expression network

sample Hb_004734_010 Hb_004734_010 Hb_000300_150 Hb_000300_150 Hb_004734_010--Hb_000300_150 Hb_000189_140 Hb_000189_140 Hb_004734_010--Hb_000189_140 Hb_003656_060 Hb_003656_060 Hb_004734_010--Hb_003656_060 Hb_001373_180 Hb_001373_180 Hb_004734_010--Hb_001373_180 Hb_001473_040 Hb_001473_040 Hb_004734_010--Hb_001473_040 Hb_001511_070 Hb_001511_070 Hb_004734_010--Hb_001511_070 Hb_032699_010 Hb_032699_010 Hb_000300_150--Hb_032699_010 Hb_000366_010 Hb_000366_010 Hb_000300_150--Hb_000366_010 Hb_004712_150 Hb_004712_150 Hb_000300_150--Hb_004712_150 Hb_000103_480 Hb_000103_480 Hb_000300_150--Hb_000103_480 Hb_003952_060 Hb_003952_060 Hb_000300_150--Hb_003952_060 Hb_000189_140--Hb_001373_180 Hb_013607_040 Hb_013607_040 Hb_000189_140--Hb_013607_040 Hb_011242_040 Hb_011242_040 Hb_000189_140--Hb_011242_040 Hb_001140_220 Hb_001140_220 Hb_000189_140--Hb_001140_220 Hb_000317_280 Hb_000317_280 Hb_000189_140--Hb_000317_280 Hb_007747_200 Hb_007747_200 Hb_000189_140--Hb_007747_200 Hb_003656_060--Hb_001473_040 Hb_004223_030 Hb_004223_030 Hb_003656_060--Hb_004223_030 Hb_000033_020 Hb_000033_020 Hb_003656_060--Hb_000033_020 Hb_005188_020 Hb_005188_020 Hb_003656_060--Hb_005188_020 Hb_000009_450 Hb_000009_450 Hb_003656_060--Hb_000009_450 Hb_003090_260 Hb_003090_260 Hb_003656_060--Hb_003090_260 Hb_001373_180--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_001373_180--Hb_004846_070 Hb_000723_080 Hb_000723_080 Hb_001373_180--Hb_000723_080 Hb_000002_050 Hb_000002_050 Hb_001373_180--Hb_000002_050 Hb_002235_280 Hb_002235_280 Hb_001373_180--Hb_002235_280 Hb_003929_130 Hb_003929_130 Hb_001473_040--Hb_003929_130 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_029888_010 Hb_029888_010 Hb_001511_070--Hb_029888_010 Hb_000856_150 Hb_000856_150 Hb_001511_070--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198744 0.201645 0.12258 0 0 0.161867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18414 0.289472 0.383072 0.0887205 0.282792

CAGE analysis