Hb_000189_140

Information

Type -
Description -
Location Contig189: 151759-152694
Sequence    

Annotation

kegg
ID rcu:RCOM_0484640
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002531295.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LJ69
description Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
trembl
ID B9SZ76
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0484640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at3g18970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_140 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001373_180 0.0860804887 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
3 Hb_013607_040 0.1181440945 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
4 Hb_011242_040 0.1245105038 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
5 Hb_001140_220 0.1258838862 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000317_280 0.1264726301 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
7 Hb_007747_200 0.1266263249 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
8 Hb_008695_100 0.1268092407 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
9 Hb_005532_060 0.1271585382 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
10 Hb_000723_080 0.1279680456 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_000343_130 0.1284012014 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
12 Hb_002235_280 0.1294524772 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
13 Hb_000002_050 0.1301929367 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
14 Hb_001002_030 0.1314830812 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
15 Hb_019263_020 0.132575579 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
16 Hb_005162_070 0.1335407086 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_180 0.134446069 - - Auxin-induced protein X10A, putative [Ricinus communis]
18 Hb_007416_270 0.1371891349 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
19 Hb_007483_100 0.1382686369 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
20 Hb_010172_050 0.1385687039 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_140 Hb_000189_140 Hb_001373_180 Hb_001373_180 Hb_000189_140--Hb_001373_180 Hb_013607_040 Hb_013607_040 Hb_000189_140--Hb_013607_040 Hb_011242_040 Hb_011242_040 Hb_000189_140--Hb_011242_040 Hb_001140_220 Hb_001140_220 Hb_000189_140--Hb_001140_220 Hb_000317_280 Hb_000317_280 Hb_000189_140--Hb_000317_280 Hb_007747_200 Hb_007747_200 Hb_000189_140--Hb_007747_200 Hb_001373_180--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_001373_180--Hb_004846_070 Hb_000723_080 Hb_000723_080 Hb_001373_180--Hb_000723_080 Hb_000002_050 Hb_000002_050 Hb_001373_180--Hb_000002_050 Hb_002235_280 Hb_002235_280 Hb_001373_180--Hb_002235_280 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_013607_040--Hb_002235_280 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_011242_040--Hb_001140_220 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_000567_120 Hb_000567_120 Hb_001140_220--Hb_000567_120 Hb_001140_220--Hb_002235_280 Hb_001140_220--Hb_000258_270 Hb_008695_100 Hb_008695_100 Hb_001140_220--Hb_008695_100 Hb_001140_220--Hb_000723_080 Hb_000317_280--Hb_007747_200 Hb_000343_130 Hb_000343_130 Hb_000317_280--Hb_000343_130 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_006846_110 Hb_006846_110 Hb_000317_280--Hb_006846_110 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_006846_110 Hb_007747_200--Hb_000343_130 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62178 1.1972 0.40771 0.317513 0.438831 1.59214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09248 2.2086 3.5706 0.994348 1.58675

CAGE analysis